Evidence map›Paper›PMID 37240369›Full record

ArticleInternational journal of molecular sciences2023

Computational and Experimental Evaluation of the Immune Response of Neoantigens for Personalized Vaccine Design.

Iker Malaina, Lorena Gonzalez-Melero, Luis Martínez, Aiala Salvador, Ana Sanchez-Diez, Aintzane Asumendi, Javier Margareto, Jose Carrasco-Pujante, Leire Legarreta, María Asunción García and 7 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Iker MalainaDepartment of Mathematics, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), 48940 Leioa, Spain.ORCID 0000-0002-1305-6623
Lorena Gonzalez-MeleroNanoBioCel Research Group, Laboratory of Pharmaceutics, School of Pharmacy, University of the Basque Country (UPV/EHU), 01006 Vitoria-Gasteiz, Spain.ORCID 0000-0003-4636-2237
Luis MartínezDepartment of Mathematics, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), 48940 Leioa, Spain.
Aiala SalvadorNanoBioCel Research Group, Laboratory of Pharmaceutics, School of Pharmacy, University of the Basque Country (UPV/EHU), 01006 Vitoria-Gasteiz, Spain.ORCID 0000-0002-4860-2372
Ana Sanchez-DiezDepartment of Dermatology, Basurto University Hospital, 48013 Bilbao, Spain.
Aintzane AsumendiBiocruces Bizkaia Health Research Institute, 48903 Barakaldo, Spain.ORCID 0000-0002-2156-2323
Javier MargaretoTechnological Services Division, Health and Quality of Life, TECNALIA, 01510 Miñano, Spain.ORCID 0000-0003-2160-309X
Jose Carrasco-PujanteDepartment of Mathematics, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), 48940 Leioa, Spain.
Leire LegarretaDepartment of Mathematics, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), 48940 Leioa, Spain.ORCID 0000-0002-2058-0466
María Asunción GarcíaDepartment of Mathematics, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), 48940 Leioa, Spain.
Martín Blas Pérez-PinillaDepartment of Mathematics, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), 48940 Leioa, Spain.
Rosa IzuDepartment of Dermatology, Basurto University Hospital, 48013 Bilbao, Spain.ORCID 0000-0001-6159-6395
Ildefonso Martínez de la FuenteDepartment of Mathematics, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), 48940 Leioa, Spain.
Manoli IgartuaNanoBioCel Research Group, Laboratory of Pharmaceutics, School of Pharmacy, University of the Basque Country (UPV/EHU), 01006 Vitoria-Gasteiz, Spain.ORCID 0000-0002-6439-4569
Santos AlonsoDepartment of Genetics, Physical Anthropology and Animal Physiology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), 48940 Leioa, Spain.ORCID 0000-0003-0221-4048
Rosa Maria HernandezNanoBioCel Research Group, Laboratory of Pharmaceutics, School of Pharmacy, University of the Basque Country (UPV/EHU), 01006 Vitoria-Gasteiz, Spain.ORCID 0000-0002-3947-409X
María Dolores BoyanoBiocruces Bizkaia Health Research Institute, 48903 Barakaldo, Spain.ORCID 0000-0001-6051-1054
University of the Basque Country · ESBioCruces Health research Institute · ES

Funding

Basque Center for Applied Mathematics US18/21Basque Government IT1448-22Basque Government IT456-22Basque Government ONKOiker KK2018/00090Basque Government ONKOVAC 2021111042University of the Basque Country GIU17/066University of the Basque Country PIF18/295University of the Basque Country US18/21
6 · The paper itself

Abstract

In the last few years, the importance of neoantigens in the development of personalized antitumor vaccines has increased remarkably. In order to study whether bioinformatic tools are effective in detecting neoantigens that generate an immune response, DNA samples from patients with cutaneous melanoma in different stages were obtained, resulting in a total of 6048 potential neoantigens gathered. Thereafter, the immunological responses generated by some of those neoantigens ex vivo were tested, using a vaccine designed by a new optimization approach and encapsulated in nanoparticles. Our bioinformatic analysis indicated that no differences were found between the number of neoantigens and that of non-mutated sequences detected as potential binders by IEDB tools. However, those tools were able to highlight neoantigens over non-mutated peptides in HLA-II recognition (

Indexed as

Cancer VaccinesMelanomaNeoplasmsSkin NeoplasmsAntigens, NeoplasmHumansImmunityVaccine DevelopmentAntigens, NeoplasmCancer Vaccinesbioinformaticsex vivohuman leucocytic antigenimmunogenicitynanoparticleneoantigenvaccine design

Identifiers

PMID37240369
PMCPMC10219310
OpenAlexW4377115931

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.