Evidence map›Paper›PMID 37240180›Full record

ArticleInternational journal of molecular sciences2023

Multi-Omics Data Integration Reveals Key Variables Contributing to Subgingival Microbiome Dysbiosis-Induced Inflammatory Response in a Hyperglycemic Microenvironment.

Sarah Lafleur, Antoine Bodein, Joanna Mbuya Malaïka Mutombo, Alban Mathieu, Charles Joly Beauparlant, Xavier Minne, Fatiha Chandad, Arnaud Droit, Vanessa P Houde

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Sarah LafleurOral Ecology Research Group (GREB), Faculty of Dentistry, Université Laval, 2420 rue de la Terrasse, Québec, QC G1V 0A6, Canada.
Antoine BodeinMolecular Medicine Department, CHU de Québec Research Center, Université Laval, Québec, QC G1V 4G2, Canada.
Joanna Mbuya Malaïka MutomboOral Ecology Research Group (GREB), Faculty of Dentistry, Université Laval, 2420 rue de la Terrasse, Québec, QC G1V 0A6, Canada.
Alban MathieuMolecular Medicine Department, CHU de Québec Research Center, Université Laval, Québec, QC G1V 4G2, Canada.
Charles Joly BeauparlantMolecular Medicine Department, CHU de Québec Research Center, Université Laval, Québec, QC G1V 4G2, Canada.
Xavier MinneOral Ecology Research Group (GREB), Faculty of Dentistry, Université Laval, 2420 rue de la Terrasse, Québec, QC G1V 0A6, Canada.ORCID 0000-0002-0850-0187
Fatiha ChandadOral Ecology Research Group (GREB), Faculty of Dentistry, Université Laval, 2420 rue de la Terrasse, Québec, QC G1V 0A6, Canada.
Arnaud DroitMolecular Medicine Department, CHU de Québec Research Center, Université Laval, Québec, QC G1V 4G2, Canada.
Vanessa P HoudeOral Ecology Research Group (GREB), Faculty of Dentistry, Université Laval, 2420 rue de la Terrasse, Québec, QC G1V 0A6, Canada.ORCID 0000-0003-1932-805X
Université Laval · CA

Funding

Biocodex (France) Biocodex Microbiota Foundation
6 · The paper itself

Abstract

Subgingival microbiome dysbiosis promotes the development of periodontitis, an irreversible chronic inflammatory disease associated with metabolic diseases. However, studies regarding the effects of a hyperglycemic microenvironment on host-microbiome interactions and host inflammatory response during periodontitis are still scarce. Here, we investigated the impacts of a hyperglycemic microenvironment on the inflammatory response and transcriptome of a gingival coculture model stimulated with dysbiotic subgingival microbiomes. HGF-1 cells overlaid with U937 macrophage-like cells were stimulated with subgingival microbiomes collected from four healthy donors and four patients with periodontitis. Pro-inflammatory cytokines and matrix metalloproteinases were measured while the coculture RNA was submitted to a microarray analysis. Subgingival microbiomes were submitted to 16s rRNA gene sequencing. Data were analyzed using an advanced multi-omics bioinformatic data integration model. Our results show that the genes

Indexed as

MicrobiotaPeriodontitisBacteriaCytokinesDysbiosisHumansMultiomicsRNA-Binding ProteinsRNA, Ribosomal, 16SU937 CellsCytokinesRNA-Binding ProteinsRNA, Ribosomal, 16STHOC6 protein, humancomputational biologycytokinesdysbiosishyperglycemiainflammationmetagenomicmetalloproteasesmicrobiomeomics integrationperiodontitis

Identifiers

PMID37240180
PMCPMC10218861
OpenAlexW4377041783

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.