ArticleInternational journal of molecular sciences2023
Transcriptome Analysis of Rice Embryo and Endosperm during Seed Germination.
Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 17 citations in OpenAlex.
- Integrating transcriptomic, physiological, and biochemical studies revealing the role of endogenous ABA and GAFrontiers in plant science · 2026Article
- Comprehensive Profiling of the miRNome and Degradome Reveals Regulatory Signatures of Seed Aging and Germination.International journal of molecular sciences · 2025Article
- Alternative polyadenylation and metabolic profiling in young panicle development of hybrid rice and its parents.Rice (New York, N.Y.) · 2025Article
- Transcriptome and metabolome analyses reveal new insights into the regulatory mechanism of early embryoless seed development in rice.BMC plant biology · 2025Article
- Critical radicle length window governing loss of dehydration tolerance in germinated Perilla seeds: insights from physiological and transcriptomic analyses.BMC plant biology · 2024Article
- Metabolic profiling and spatial metabolite distribution in wild soybean (Food chemistry: X · 2024Article
- OsRAV1 Regulates Seed Vigor and Salt Tolerance During Germination in Rice.Rice (New York, N.Y.) · 2024Article
- The maternal embrace: the protection of plant embryos.Journal of experimental botany · 2024Review
- Effect of Bacterial Extracellular Polymeric Substances fromMicroorganisms · 2024Article
- Chitosan Oligosaccharides Mitigate Flooding Stress Damage in Rice by Affecting Antioxidants, Osmoregulation, and Hormones.Antioxidants (Basel, Switzerland) · 2024Article
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
Abstract
Seed germination is a complex, multistage developmental process that is an important step in plant development. In this study, RNA-Seq was conducted in the embryo and endosperm of unshelled germinating rice seeds. A total of 14,391 differentially expressed genes (DEGs) were identified between the dry seeds and the germinating seeds. Of these DEGs, 7109 were identified in both the embryo and endosperm, 3953 were embryo specific, and 3329 were endosperm specific. The embryo-specific DEGs were enriched in the plant-hormone signal-transduction pathway, while the endosperm-specific DEGs were enriched in phenylalanine, tyrosine, and tryptophan biosynthesis. We categorized these DEGs into early-, intermediate-, and late-stage genes, as well as consistently responsive genes, which can be enriched in various pathways related to seed germination. Transcription-factor (TF) analysis showed that 643 TFs from 48 families were differentially expressed during seed germination. Moreover, 12 unfolded protein response (UPR) pathway genes were induced by seed germination, and the knockout of
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