Evidence map›Paper›PMID 37239478›Full record

ArticleGenes2023

Whole Exome Sequencing Reveals Clustering of Variants of Known Vitiligo Genes in Multiplex Consanguineous Pakistani Families.

Rafaqat Ishaq, Muhammad Ilyas, Umme Habiba, Muhammad Noor Ul Amin, Sadia Saeed, Ghazala Kaukab Raja, Pakeeza Arzoo Shaiq, Zubair M Ahmed

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 76% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Rafaqat IshaqUniversity Institute of Biochemistry and Biotechnology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan.
Muhammad IlyasUniversity Institute of Biochemistry and Biotechnology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan.ORCID 0000-0003-2168-8652
Umme HabibaUniversity Institute of Biochemistry and Biotechnology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan.
Muhammad Noor Ul AminUniversity Institute of Biochemistry and Biotechnology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan.
Sadia SaeedUniversity Institute of Biochemistry and Biotechnology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan.ORCID 0000-0002-6587-6543
Ghazala Kaukab RajaUniversity Institute of Biochemistry and Biotechnology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan.ORCID 0000-0002-8362-7137
Pakeeza Arzoo ShaiqUniversity Institute of Biochemistry and Biotechnology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan.ORCID 0000-0003-0952-5375
Zubair M AhmedDepartment of Otorhinolaryngology-Head and Neck Surgery, School of Medicine, University of Maryland, Baltimore, MD 20742, USA.ORCID 0000-0003-2914-4502
Pir Mehr Ali Shah Arid Agriculture University · PKUniversity of Maryland, Baltimore · USRiphah International University · PKUniversity of Oslo · NO

Funding

Molecular Determinants of Pigmentation (MDoP)R01AR077563 · NIAMS · UNIVERSITY OF MARYLAND BALTIMORE · PI Zubair M. Ahmed · 2021 to 2026
$2.4M
NIAMS NIH HHS R01 AR077563NIAMS NIH HHS R01AR077563
6 · The paper itself

Abstract

Vitiligo is an autoimmune complex pigmentation disease characterized by non-pigmented patches on the surface of the skin that affect approximately 0.5-2% population worldwide. The exact etiology is still unknown; however, vitiligo is hypothesized to be a multifactorial and genetically heterogeneous condition. Therefore, the current study is designed to investigate the anthropometric presentation and genetic spectrum of vitiligo in fifteen consanguineous Pakistani families. The clinical evaluation of participating individuals revealed varying degrees of disease severity, with 23 years as the average age of disease onset. The majority of the affected individuals had non-segmental vitiligo (NSV). Whole exome sequencing analysis revealed clustering of rare variants of known vitiligo-associated genes. For instance, in the affected individuals of family VF-12, we identified three novel rare variants of

Indexed as

Autoimmune DiseasesVitiligoCluster AnalysisConsanguinityExome SequencingGenetic Predisposition to DiseaseHumansPakistanProtein Tyrosine Phosphatase, Non-Receptor Type 22Protein Tyrosine Phosphatase, Non-Receptor Type 22PTPN22 protein, humanallele clusteringgenetic heterogeneityHERC2non-segmental vitiligoNRROSpolygenic burdenPTPN22vitiligo

Identifiers

PMID37239478
PMCPMC10218579
OpenAlexW4377289425

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.