Evidence map›Paper›PMID 37239431›Full record

ArticleGenes2023

US Population Data for 94 Identity-Informative SNP Loci.

Kevin M Kiesler, Lisa A Borsuk, Carolyn R Steffen, Peter M Vallone, Katherine B Gettings

Abstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kevin M KieslerNational Institute of Standards and Technology, 100 Bureau Drive, Mailstop 8314, Gaithersburg, MD 20899, USA.ORCID 0000-0001-7995-6328
Lisa A BorsukNational Institute of Standards and Technology, 100 Bureau Drive, Mailstop 8314, Gaithersburg, MD 20899, USA.
Carolyn R SteffenNational Institute of Standards and Technology, 100 Bureau Drive, Mailstop 8314, Gaithersburg, MD 20899, USA.ORCID 0000-0002-7183-3785
Peter M ValloneNational Institute of Standards and Technology, 100 Bureau Drive, Mailstop 8314, Gaithersburg, MD 20899, USA.ORCID 0000-0002-8019-6204
Katherine B GettingsNational Institute of Standards and Technology, 100 Bureau Drive, Mailstop 8314, Gaithersburg, MD 20899, USA.ORCID 0000-0001-5086-8375

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The US National Institute of Standards and Technology (NIST) analyzed a set of 1036 samples representing four major US population groups (African American, Asian American, Caucasian, and Hispanic) with 94 single nucleotide polymorphisms (SNPs) used for individual identification (iiSNPs). The compact size of iiSNP amplicons compared to short tandem repeat (STR) markers increases the likelihood of successful amplification with degraded DNA samples. Allele frequencies and relevant forensic statistics were calculated for each population group as well as the aggregate population sample. Examination of sequence data in the regions flanking the targeted SNPs identified additional variants, which can be combined with the target SNPs to form microhaplotypes (multiple phased SNPs within a short-read sequence). Comparison of iiSNP performance with and without flanking SNP variation identified four amplicons containing microhaplotypes with observed heterozygosity increases of greater than 15% over the targeted SNP alone. For this set of 1036 samples, comparison of average match probabilities from iiSNPs with the 20 CODIS core STR markers yielded an estimate of 1.7 × 10

Indexed as

High-Throughput Nucleotide SequencingPolymorphism, Single NucleotideGene FrequencyGenotypeHeterozygotehuman identificationmicrohaplotypenext generation sequencingsingle nucleotide polymorphism

Identifiers

PMID37239431
PMCPMC10217833

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.