Evidence map›Paper›PMID 37238213›Full record

ArticleDiagnostics (Basel, Switzerland)2023

Plasma Proteomic Analysis Reveals the Potential Role of Lectin and Alternative Complement Pathways in IgA Vasculitis Pathogenesis.

Selcan Demir, Idil Yet, Melis Sardan Ekiz, Erdal Sag, Yelda Bilginer, Omur Celikbicak, Incilay Lay, Seza Ozen

Open access · goldAbstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Selcan DemirDepartment of Pediatric Rheumatology, Hacettepe University Medical Faculty, 06230 Ankara, Turkey.ORCID 0000-0002-4320-8632
Idil YetDepartment of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, 06230 Ankara, Turkey.ORCID 0000-0002-1227-0716
Melis Sardan EkizAdvanced Technologies Application and Research Center (HUNITEK), Hacettepe University, 06230 Ankara, Turkey.
Erdal SagDepartment of Pediatric Rheumatology, Hacettepe University Medical Faculty, 06230 Ankara, Turkey.
Yelda BilginerDepartment of Pediatric Rheumatology, Hacettepe University Medical Faculty, 06230 Ankara, Turkey.
Omur CelikbicakDepartment of Chemistry, Hacettepe University, 06230 Ankara, Turkey.
Incilay LayDepartment of Biochemistry, Hacettepe University Medical Faculty, 06230 Ankara, Turkey.ORCID 0000-0002-1466-5746
Seza OzenDepartment of Pediatric Rheumatology, Hacettepe University Medical Faculty, 06230 Ankara, Turkey.
Hacettepe University · TR

Funding

Hacettepe University TCP-2020-18195
6 · The paper itself

Abstract

backgroundIgA vasculitis (IgAV) is the most common form of childhood vasculitis. A better understanding of its pathophysiology is required to identify new potential biomarkers and treatment targets.

objectiveto assess the underlying molecular mechanisms in the pathogenesis of IgAV using an untargeted proteomics approach.

methodsThirty-seven IgAV patients and five healthy controls were enrolled. Plasma samples were collected on the day of diagnosis before any treatment was initiated. We used nano-liquid chromatography-tandem mass spectrometry (nLC-MS/MS) to investigate the alterations in plasma proteomic profiles. For the bioinformatics analyses, databases including Uniprot, PANTHER, KEGG, Reactome, Cytoscape, and IntAct were used.

resultsAmong the 418 proteins identified in the nLC-MS/MS analysis, 20 had significantly different expressions in IgAV patients. Among them, 15 were upregulated and 5 were downregulated. According to the KEGG pathway and function classification analysis, complement and coagulation cascades were the most enriched pathways. GO analyses showed that the differentially expressed proteins were mainly involved in defense/immunity proteins and the metabolite interconversion enzyme family. We also investigated molecular interactions in the identified 20 proteins of IgAV patients. We extracted 493 interactions from the IntAct database for the 20 proteins and used Cytoscape for the network analyses.

conclusionOur results clearly suggest the role of the lectin and alternate complement pathways in IgAV. The proteins defined in the pathways of cell adhesion may serve as biomarkers. Further functional studies may lead the way to better understanding of the disease and new therapeutic options for IgAV treatment.

Indexed as

alternative complement pathwayHenoch–Schönlein purpuraIgA vasculitislectin complement pathwaypathogenesisproteomic

Identifiers

PMID37238213
PMCPMC10217085
OpenAlexW4378516867

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.