Evidence map›Paper›PMID 37237307›Full record

ArticleMalaria journal2023

Ex vivo RSA and pfkelch13 targeted-amplicon deep sequencing reveal parasites susceptibility to artemisinin in Senegal, 2017.

Mamadou Samb Yade, Baba Dièye, Romain Coppée, Aminata Mbaye, Mamadou Alpha Diallo, Khadim Diongue, Justine Bailly, Atikatou Mama, Awa Fall, Alphonse Birane Thiaw and 11 more

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 5 countries.

Mamadou Samb YadeLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal. borombakh66@gmail.com.
Baba DièyeLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Romain CoppéeUniversité Paris Cité and Sorbonne Paris Nord, Inserm, IAME, 75018, Paris, France.
Aminata MbayeUniversité Gamal Abdel Nasser de Conakry/Centre for Research and Training in Infectiology of Guinea (CERFIG), Conakry, Guinea.
Mamadou Alpha DialloLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Khadim DiongueLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Justine BaillyUniversité Paris Cité, IRD, MERIT, 75006, Paris, France.
Atikatou MamaUniversité de Paris, Institut Cochin, Inserm U1016, Service de Parasitologie Hôpital Cochin, 75014, Paris, France.
Awa FallLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Alphonse Birane ThiawDepartment of Biochemistry and Functional Genomics, Faculty of Medicine and Health Sciences, Université de Sherbrooke, Sherbrooke, Canada.
Ibrahima Mbaye NdiayeLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Tolla NdiayeLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Amy GayeLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Abdoulaye TineLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Younouss DiédhiouLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Amadou Mactar MbayeLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Cécile Doderer-LangUniversité de Strasbourg, Institute of Parasitology and Tropical Diseases, UR7292 Dynamics of Host-Pathogen Interactions, 67000, Strasbourg, France.
Mamane Nassirou GarbaLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Amy Kristine BeiLaboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Didier Ménard *Université de Strasbourg, Institute of Parasitology and Tropical Diseases, UR7292 Dynamics of Host-Pathogen Interactions, 67000, Strasbourg, France.
Daouda Ndiaye *Laboratory of Parasitology-Mycology, Aristide le Dantec Hospital, Université Cheikh Anta Diop, Dakar, Senegal.
Cheikh Anta Diop University · SNInstitute of Health Research, Epidemiological Surveillance and Training · SNUniversité Paris Cité · FRGamal Abdel Nasser University of Conakry · GNHarvard University · USHôpital Cochin · FRUniversité de Sherbrooke · CAUniversité de Strasbourg · FRUniversité Sorbonne Paris Nord · FR

Funding

Sequencing and Genomics CoresU19AI089696 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI KROGSTAD, DONALD JOHN · 2010 to 2016
$10.6M
Cochin institute ANR Chrono ANR-19-CE35-0009Institut Pasteur, Paris, the French Government (Agence Nationale de la Recherche), Laboratoire d'Excellence (LabEx) "French Parasitology Alliance for Health Care" ANR-11-15 LABX-0024-PARAFRAPInternational Centers of Excellence for Malaria Research (ICEMR), West Africa U19AI089696NIAID NIH HHS U19 AI089696
6 · The paper itself

Abstract

backgroundMalaria control is highly dependent on the effectiveness of artemisinin-based combination therapy (ACT), the current frontline malaria curative treatment. Unfortunately, the emergence and spread of parasites resistant to artemisinin (ART) derivatives in Southeast Asia and South America, and more recently in Rwanda and Uganda (East Africa), compromise their long-term use in sub-Saharan Africa, where most malaria deaths occur.

methodsHere, ex vivo susceptibility to dihydroartemisinin (DHA) was evaluated from 38 Plasmodium falciparum isolates collected in 2017 in Thiès (Senegal) expressed in the Ring-stage Survival Assay (RSA). Both major and minor variants were explored in the three conserved-encoding domains of the pfkelch13 gene, the main determinant of ART resistance using a targeted-amplicon deep sequencing (TADS) approach.

resultsAll samples tested in the ex vivo RSA were found to be susceptible to DHA (parasite survival rate < 1%). The non-synonymous mutations K189T and K248R in pfkelch13 were observed each in one isolate, as major (99%) or minor (5%) variants, respectively.

conclusionThe results suggest that ART is still fully effective in the Thiès region of Senegal in 2017. Investigations combining ex vivo RSA and TADS are a useful approach for monitoring ART resistance in Africa.

Indexed as

AntimalarialsArtemisininsMalaria, FalciparumParasitesAnimalsDrug ResistanceHigh-Throughput Nucleotide SequencingHumansMutationPlasmodium falciparumProtozoan ProteinsSenegalUgandaAntimalarialsartemisininArtemisininsartenimolProtozoan ProteinsArtemisinin partial resistanceMalariaPfkelch13 genotypePlasmodium falciparumRing-stage Survival AssaySenegalTargeted-amplicon deep sequencing

Identifiers

PMID37237307
PMCPMC10223908
OpenAlexW4378470419

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.