Evidence map›Paper›PMID 37237171›Full record

ArticleBotanical studies2023

Transcriptome profiles reveal gene regulation of ginger flowering induced by photoperiod and light quality.

Qinyu Deng, Yangtao Zhang, Kang Liu, Guo Zheng, Longyan Gao, Zhexin Li, Mengjun Huang, Yusong Jiang

Open access · goldAbstract read
In one paragraph

Article in Botanical studies, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Qinyu DengCollege of Biology and Food Engineering, Chongqing Three Gorges University, Chongqing, 404000, China.ORCID http://orcid.org/0000-0002-2240-6023
Yangtao ZhangCollege of Biology and Food Engineering, Chongqing Three Gorges University, Chongqing, 404000, China.
Kang LiuResearch Institute for Special Plants, Chongqing University of Arts and Sciences, Chongqing, 402160, China.
Guo ZhengCollege of Biology and Food Engineering, Chongqing Three Gorges University, Chongqing, 404000, China.
Longyan GaoResearch Institute for Special Plants, Chongqing University of Arts and Sciences, Chongqing, 402160, China.
Zhexin LiResearch Institute for Special Plants, Chongqing University of Arts and Sciences, Chongqing, 402160, China.
Mengjun HuangResearch Institute for Special Plants, Chongqing University of Arts and Sciences, Chongqing, 402160, China. hmj007@126.com.ORCID http://orcid.org/0000-0002-3341-8011
Yusong JiangCollege of Biology and Food Engineering, Chongqing Three Gorges University, Chongqing, 404000, China. jysong@126.com.
Chongqing University of Arts and Sciences · CNSouthwest University · CN

Funding

National Natural Science Foundation of China 31501273National Natural Science Foundation of China 82204574Postdoctoral Science Foundation of China 2021M700623Scientific Research Fund of Chongqing Municipal Education Commission KJQN202001337Social undertakings and livelihood security Project of Science and Technology Committee of Yongchuan District 2020cc0106Social undertakings and livelihood security Project of Science and Technology Committee of Yongchuan District 2021yc-cxfz30018Social undertakings and livelihood security Project of Science and Technology Committee of Yongchuan District Ycstc
6 · The paper itself

Abstract

backgroundUnder natural conditions, ginger (Zingiber officinale Rosc.) rarely blossom and has seed, which limits new variety breeding of ginger and industry development. In this study, the effects of different photoperiods and light quality on flowering induction in ginger were performed, followed by gene expression analysis of flower buds differentiation under induced treatment using RNA-seq technology.

resultsFirst, both red light and long light condition (18 h light/6 h dark) could effectively induce differentiation of flower buds in ginger. Second, a total of 3395 differentially expressed genes were identified from several different comparisons, among which nine genes, including CDF1, COP1, GHD7, RAV2-like, CO, FT, SOC1, AP1 and LFY, were identified to be associated with flowering in induced flower buds and natural leaf buds. Aside from four down-regulated genes (CDF1, COP1, GHD7 and RAV2-like), other five genes were all up-regulated expression. These differentially expressed genes were mainly classified into 2604 GO categories, which were further enriched into 120 KEGG metabolic pathways. Third, expression change of flowering-related genes in ginger indicated that the induction may negatively regulated expression of CDF1, COP1, GHD7 and RAV2-like, and subsequently positively regulated expression of CO, FT, SOC1, LFY and AP1, which finally led to ginger flowering. In addition, the RNA-seq results were verified by qRT-PCR analysis of 18 randomly selected genes, which further demonstrated the reliability of transcriptome analysis.

conclusionThis study revealed the ginger flowering mechanism induced by light treatment and provided abundant gene information, which contribute to the development of hybrid breeding of ginger.

Indexed as

Flowering mechanismGingerLong photoperiodRed light treatmentTranscriptome sequencing

Identifiers

PMID37237171
PMCPMC10219913
OpenAlexW4378515044

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.