Evidence map›Paper›PMID 37237081›Full record

ArticleNature cancer2023

Genome-scale functional genomics identify genes preferentially essential for multiple myeloma cells compared to other neoplasias.

Ricardo de Matos Simoes, Ryosuke Shirasaki, Sondra L Downey-Kopyscinski, Geoffrey M Matthews, Benjamin G Barwick, Vikas A Gupta, Daphné Dupéré-Richer, Shizuka Yamano, Yiguo Hu, Michal Sheffer and 31 more

Open access · greenAbstract read
In one paragraph

Article in Nature cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 36 citations in OpenAlex.

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  19. CAR-mediated target recognition limits TCR-mediated target recognition of TCR- and CAR-dual-receptor-edited T cells.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 8 institutions in 3 countries.

Ricardo de Matos Simoes *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Ryosuke Shirasaki *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Sondra L Downey-Kopyscinski *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Geoffrey M Matthews *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Benjamin G Barwick *Department of Hematology and Medical Oncology and the Winship Cancer Institute, Emory University, Atlanta, GA, USA.ORCID 0000-0001-9810-3566
Vikas A GuptaDepartment of Hematology and Medical Oncology and the Winship Cancer Institute, Emory University, Atlanta, GA, USA.ORCID 0000-0002-8980-2338
Daphné Dupéré-RicherUniversity of Florida Health Cancer Center, Gainesville, FL, USA.
Shizuka YamanoDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Yiguo HuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0002-3973-2140
Michal ShefferDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Eugen DhimoleaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Olga DashevskyDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Sara GandolfiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Kazuya IshiguroDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Robin M MeyersBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Jordan G BryanBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID 0000-0002-4984-0516
Neekesh V DhariaHarvard Medical School, Boston, MA, USA.
Paul J HengeveldDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Johanna B BrüggenthiesDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Huihui TangDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Andrew J AguirreDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0002-0701-6203
Quinlan L SieversDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Benjamin L EbertDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0003-0197-5451
Brian J GlassnerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Christopher J OttDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0001-6142-7241
James E BradnerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0002-2718-4415
Nicholas P KwiatkowskiHarvard Medical School, Boston, MA, USA.
Daniel AuclairMultiple Myeloma Research Foundation, Norwalk, CT, USA.
Joan LevyMultiple Myeloma Research Foundation, Norwalk, CT, USA.
Jonathan J KeatsTranslational Genomics Research Institute, Phoenix, AZ, USA.ORCID 0000-0003-4375-7399
Richard W J GroenDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Nathanael S GrayDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0001-5354-7403
Aedin C CulhaneDepartment of Data Sciences, Dana-Farber Cancer Institute & Harvard School of Public Health, Boston, MA, USA.ORCID 0000-0002-1395-9734
James M McFarlandBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID 0000-0001-9978-480X
Joshua M DempsterBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID 0000-0002-3634-9576
Jonathan D LichtUniversity of Florida Health Cancer Center, Gainesville, FL, USA.ORCID 0000-0002-3942-1369
Lawrence H BoiseDepartment of Hematology and Medical Oncology and the Winship Cancer Institute, Emory University, Atlanta, GA, USA.ORCID 0000-0001-9436-8815
William C HahnDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0003-2840-9791
Francisca VazquezBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA. vazquez@broadinstitute.org.ORCID 0000-0002-2857-4685
Aviad TsherniakBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA. aviad@broadinstitute.org.ORCID 0000-0002-3797-1877
Constantine S MitsiadesDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA. constantine_mitsiades@dfci.harvard.edu.ORCID 0000-0003-2321-8005
Broad Institute · USHarvard University · USEmory University · USMultiple Myeloma Research Foundation · USUniversity of Florida Health · USDana-Farber Cancer Institute · USTranslational Genomics Research Institute · USUniversity of Limerick · IE

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
The Dana-Farber Cancer Institute Cancer Target Discovery and Development CenterU01CA176058 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2013 to 2021
$7.8M
Role of Cytokines in Myeloma PathogenesisR01CA050947 · NCI · DANA-FARBER CANCER INSTITUTE · PI ANDERSON, KENNETH C., MITSIADES, CONSTANTINE S. · 1991 to 2018
$5.1M
Analysis of E-selectin Ligands of Human Acute Leukemia Cells and their Biology in LeukemogenesisU01CA225730 · NCI · FLORIDA INTERNATIONAL UNIVERSITY · PI MITSIADES, CONSTANTINE S., SACKSTEIN, ROBERT · 2019 to 2023
$3.0M
The Role of CD86 in Multiple MyelomaR01CA192844 · NCI · EMORY UNIVERSITY · PI BOISE, LAWRENCE H. · 2016 to 2020
$1.9M
UTX, MLL AND PATHOGENIC DEREGULATION OF HISTONE METHYLATION IN MULTIPLE MYELOMAR01CA180475 · NCI · UNIVERSITY OF FLORIDA · PI LICHT, JONATHAN D. · 2014 to 2020
$1.8M
Humanized bone marrow-like model to study patient-derived myeloma xenograftsR01CA196664 · NCI · DANA-FARBER CANCER INST · PI GROEN, RICHARD, MITSIADES, CONSTANTINE S. · 2016 to 2018
$1.6M
Mechanisms of natural killer cell resistance of treatment-persistent residual tumor cells in hematologic malignanciesR01CA276156 · NCI · DANA-FARBER CANCER INST · PI Constantine S. Mitsiades, Satu Mustjoki · 2023 to 2026
$1.6M
Development and Application of Selective Covalent Cdk7 InhibitorsR01CA179483 · NCI · DANA-FARBER CANCER INST · PI GRAY, NATHANAEL SCHIANDER, MITSIADES, CONSTANTINE S. · 2014 to 2016
$1.5M
Revealing the cis-Regulatory Function of IMiDs in Multiple Myeloma”.K22CA266739 · NCI · EMORY UNIVERSITY · PI BARWICK, BENJAMIN GABRIEL · 2023 to 2025
$562k
NCI NIH HHS K22 CA266739NCI NIH HHS L30 CA231673NCI NIH HHS R01 CA050947NCI NIH HHS R01 CA179483NCI NIH HHS R01 CA180475NCI NIH HHS R01 CA192844NCI NIH HHS R01 CA196664NCI NIH HHS R01 CA276156NCI NIH HHS U01 CA176058NCI NIH HHS U01 CA225730NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

Clinical progress in multiple myeloma (MM), an incurable plasma cell (PC) neoplasia, has been driven by therapies that have limited applications beyond MM/PC neoplasias and do not target specific oncogenic mutations in MM. Instead, these agents target pathways critical for PC biology yet largely dispensable for malignant or normal cells of most other lineages. Here we systematically characterized the lineage-preferential molecular dependencies of MM through genome-scale clustered regularly interspaced short palindromic repeats (CRISPR) studies in 19 MM versus hundreds of non-MM lines and identified 116 genes whose disruption more significantly affects MM cell fitness compared with other malignancies. These genes, some known, others not previously linked to MM, encode transcription factors, chromatin modifiers, endoplasmic reticulum components, metabolic regulators or signaling molecules. Most of these genes are not among the top amplified, overexpressed or mutated in MM. Functional genomics approaches thus define new therapeutic targets in MM not readily identifiable by standard genomic, transcriptional or epigenetic profiling analyses.

Indexed as

Multiple MyelomaClustered Regularly Interspaced Short Palindromic RepeatsGenomeGenomicsHumans

Identifiers

PMID37237081
PMCPMC10918623
OpenAlexW4378417047

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.