Evidence map›Paper›PMID 37236994›Full record

ArticleScientific reports2023

Differences in the transcriptional immune response to Albugo candida between white rust resistant and susceptible cultivars in Brassica rapa L.

Naomi Miyaji, Mst Arjina Akter, Motoki Shimizu, Hasan Mehraj, Md Asad-Ud Doullah, Elizabeth S Dennis, Izumi Chuma, Ryo Fujimoto

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Naomi Miyaji *Graduate School of Agricultural Science, Kobe University, Kobe, 657-8501, Japan.
Mst Arjina Akter *Graduate School of Agricultural Science, Kobe University, Kobe, 657-8501, Japan.
Motoki ShimizuIwate Biotechnology Research Center, Narita, Kitakami, Iwate, 024-0003, Japan.
Hasan MehrajGraduate School of Agricultural Science, Kobe University, Kobe, 657-8501, Japan.
Md Asad-Ud DoullahDepartment of Plant Pathology and Seed Science, Faculty of Agriculture, Sylhet Agricultural University, Sylhet, 3100, Bangladesh.
Elizabeth S DennisCSIRO Agriculture and Food, Canberra, ACT, 2601, Australia.
Izumi ChumaObihiro University of Agriculture and Veterinary Medicine, Obihiro, 080-8555, Japan.
Ryo FujimotoGraduate School of Agricultural Science, Kobe University, Kobe, 657-8501, Japan. leo@people.kobe-u.ac.jp.
Kobe University · JPIwate Biotechnology Research Center · JPAgriculture and Food · AUObihiro University of Agriculture and Veterinary Medicine · JPSylhet Agricultural University · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Albugo candida causing white rust disease decreases the yield of Brassica rapa vegetables greatly. Resistant and susceptible cultivars in B. rapa vegetables have different immune responses against A. candida inoculation, however, the mechanism of how host plants respond to A. candida is still unknown. Using RNA-sequencing, we identified differentially expressed genes (DEGs) between A. candida inoculated [48 and 72 h after inoculation (HAI)] and non-inoculated samples in resistant and susceptible cultivars of komatsuna (B. rapa var. perviridis). Functional DEGs differed between the resistant and susceptible cultivars in A. candida inoculated samples. Salicylic acid (SA) responsive genes tended to be changed in their expression levels by A. candida inoculation in both resistant and susceptible cultivars, but different genes were identified in the two cultivars. SA-dependent systemic acquired resistance (SAR) involving genes were upregulated following A. candida inoculation in the resistant cultivar. Particular genes categorized as SAR that changed expression levels overlapped between A. candida and Fusarium oxysporum f. sp. conglutinans inoculated samples in resistant cultivar, suggesting a role for SAR in defense response to both pathogens particularly in the effector-triggered immunity downstream pathway. These findings will be useful for understanding white rust resistance mechanisms in B. rapa.

Indexed as

Brassica rapaOomycetesDisease SusceptibilityImmunity, InnatePlant Diseases

Identifiers

PMID37236994
PMCPMC10219939
OpenAlexW4378472091

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.