Evidence map›Paper›PMID 37235645›Full record

ArticleScience advances2023

A noncommutative combinatorial protein logic circuit controls cell orientation in nanoenvironments.

Jiaxing Chen, Yashavantha L Vishweshwaraiah, Richard B Mailman, Erdem D Tabdanov, Nikolay V Dokholyan

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Optogenetic enzymes: A deep dive into design and impact.Current opinion in structural biology · 2025
    Review
  4. Review
  5. Review
  6. Optogenetically engineered Septin-7 enhances immune cell infiltration of tumor spheroids.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Review
  8. Article
  9. Allosteric regulation of kinase activity in living cells.bioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jiaxing ChenDepartment of Pharmacology, Penn State College of Medicine, Hershey, PA 17033-0850, USA.ORCID 0000-0003-0150-1387
Yashavantha L VishweshwaraiahDepartment of Pharmacology, Penn State College of Medicine, Hershey, PA 17033-0850, USA.ORCID 0000-0001-5984-3035
Richard B MailmanDepartment of Pharmacology, Penn State College of Medicine, Hershey, PA 17033-0850, USA.ORCID 0000-0003-1353-2738
Erdem D TabdanovDepartment of Pharmacology, Penn State College of Medicine, Hershey, PA 17033-0850, USA.ORCID 0000-0003-2673-112X
Nikolay V DokholyanDepartment of Pharmacology, Penn State College of Medicine, Hershey, PA 17033-0850, USA.ORCID 0000-0002-8225-4025
Pennsylvania State University · US

Funding

Nanoscale programming of cellular and physiological phenotypes: EquipmentR35GM134864 · NIGMS · UNIVERSITY OF VIRGINIA · PI Nikolay Dokholyan · 2020 to 2026
$5.2M
Discovery of functionally selective dopamine ligands for age-related cognitive declineRF1AG071675 · NIA · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI DOKHOLYAN, NIKOLAY, MAILMAN, RICHARD B · 2021 to 2021
$1.5M
NIA NIH HHS RF1 AG071675NIGMS NIH HHS R35 GM134864
6 · The paper itself

Abstract

Single-protein-based devices that integrate signal sensing with logical operations to generate functional outputs offer exceptional promise for monitoring and modulating biological systems. Engineering such intelligent nanoscale computing agents is challenging, as it requires the integration of sensor domains into a functional protein via intricate allosteric networks. We incorporate a rapamycin-sensitive sensor (uniRapR) and a blue light-responsive LOV2 domain into human Src kinase, creating a protein device that functions as a noncommutative combinatorial logic circuit. In our design, rapamycin activates Src kinase, causing protein localization to focal adhesions, whereas blue light exerts the reverse effect that inactivates Src translocation. Focal adhesion maturation induced by Src activation reduces cell migration dynamics and shifts cell orientation to align along collagen nanolane fibers. Using this protein device, we reversibly control cell orientation by applying the appropriate input signals, a framework that may be useful in tissue engineering and regenerative medicine.

Indexed as

Focal Adhesionssrc-Family KinasesCell AdhesionCell MovementHumansSirolimusSirolimussrc-Family Kinases

Identifiers

PMID37235645
PMCPMC10219599
OpenAlexW4378469927

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.