Evidence map›Paper›PMID 37235478›Full record

ArticleAnalytical chemistry2023

Shaping Nanobodies and Intrabodies against Proteoforms.

Bojana Leonard, Vincent Danna, Leo Gorham, Michelle Davison, William Chrisler, Doo Nam Kim, Vincent R Gerbasi

Abstract read
In one paragraph

Article in Analytical chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bojana LeonardPacific Northwest National Laboratory, Richland, Washington 99354, United States.
Vincent DannaPacific Northwest National Laboratory, Richland, Washington 99354, United States.
Leo GorhamPacific Northwest National Laboratory, Richland, Washington 99354, United States.
Michelle DavisonPacific Northwest National Laboratory, Richland, Washington 99354, United States.
William ChrislerPacific Northwest National Laboratory, Richland, Washington 99354, United States.
Doo Nam KimPacific Northwest National Laboratory, Richland, Washington 99354, United States.
Vincent R GerbasiPacific Northwest National Laboratory, Richland, Washington 99354, United States.ORCID 0000-0001-5573-0578

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteoforms expand genomic diversity and direct developmental processes. While high-resolution mass spectrometry has accelerated characterization of proteoforms, molecular techniques working to bind and disrupt the function of specific proteoforms have lagged behind. In this study, we worked to develop intrabodies capable of binding specific proteoforms. We employed a synthetic camelid nanobody library expressed in yeast to identify nanobody binders of different SARS-CoV-2 receptor binding domain (RBD) proteoforms. Importantly, employment of the positive and negative selection mechanisms inherent to the synthetic system allowed for amplification of nanobody-expressing yeast that bind to the original (Wuhan strain RBD) but not the E484 K (Beta variant) mutation. Nanobodies raised against specific RBD proteoforms were validated by yeast-2-hybrid analysis and sequence comparisons. These results provide a framework for development of nanobodies and intrabodies that target proteoforms.

Indexed as

COVID-19Single-Domain AntibodiesHumansSaccharomyces cerevisiaeSARS-CoV-2Single-Domain Antibodies

Identifiers

PMID37235478
PMCPMC10269583

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.