Evidence map›Paper›PMID 37233756›Full record

ReviewApplied microbiology and biotechnology2023

Advances in the adenylation domain: discovery of diverse non-ribosomal peptides.

Delei Xu, Zihan Zhang, Luye Yao, LingTian Wu, Yibo Zhu, Meilin Zhao, Hong Xu

Abstract readReview
PubMed Publisher
In one paragraph

Review in Applied microbiology and biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Delei XuCollege of Biological and Food Engineering, Changshu Institute of Technology, Changshu, 215500, China. xudelei@cslg.edu.cn.ORCID http://orcid.org/0009-0007-2475-4316
Zihan ZhangCollege of Biological and Food Engineering, Changshu Institute of Technology, Changshu, 215500, China.
Luye YaoCollege of Biological and Food Engineering, Changshu Institute of Technology, Changshu, 215500, China.
LingTian WuCollege of Biological and Food Engineering, Changshu Institute of Technology, Changshu, 215500, China.
Yibo ZhuCollege of Biological and Food Engineering, Changshu Institute of Technology, Changshu, 215500, China.
Meilin ZhaoCollege of Biological and Food Engineering, Changshu Institute of Technology, Changshu, 215500, China.
Hong XuCollege of Food Science and Light Industry, Nanjing Tech University, Nanjing, 211816, China.

Funding

Innovative Research Group Project of the National Natural Science Foundation of China BK20201050Major Basic Research Project of the Natural Science Foundation of the Jiangsu Higher Education Institutions 20KJB530019Postdoctoral Science Foundation of Jiangsu Province 2021M6691557Science and Technology Plan of Changshu CS202109the agricultural science and technology innovation project of Suzhou SNG2022059the National Nature Science Foundation of China 22208027the Science and Technology Development Project of Suzhou SNG2021018Youth and Middle-aged Scientific and Technological Innovation Leading Talents Program of the Corps ZXL2022003
6 · The paper itself

Abstract

Non-ribosomal peptide synthetases are mega-enzyme assembly lines that synthesize many clinically useful compounds. As a gatekeeper, they have an adenylation (A)-domain that controls substrate specificity and plays an important role in product structural diversity. This review summarizes the natural distribution, catalytic mechanism, substrate prediction methods, and in vitro biochemical analysis of the A-domain. Taking genome mining of polyamino acid synthetases as an example, we introduce research on mining non-ribosomal peptides based on A-domains. We discuss how non-ribosomal peptide synthetases can be engineered based on the A-domain to obtain novel non-ribosomal peptides. This work provides guidance for screening non-ribosomal peptide-producing strains, offers a method to discover and identify A-domain functions, and will accelerate the engineering and genome mining of non-ribosomal peptide synthetases. KEY POINTS: • Introducing adenylation domain structure, substrate prediction, and biochemical analysis methods • Advances in mining homo polyamino acids based on adenylation domain analysis • Creating new non-ribosomal peptides by engineering adenylation domains.

Indexed as

PeptidesPeptide SynthasesSubstrate SpecificityPeptidesPeptide SynthasesAdenylation domainBiochemical analysis methodEngineeringHomo polyamino acidNon-ribosomal peptides

Identifiers

PMID37233756

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.