Evidence map›Paper›PMID 37231782›Full record

ArticleRNA biology2023

PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes.

Jinsong Shi, Shuangyong Yan, Wenjing Li, Xiurong Yang, Zhongqiu Cui, Junling Li, Guangsheng Li, Yuejiao Li, Yanping Hu, Shan Gao

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in RNA biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Jinsong ShiCollege of Life Sciences, Nankai University, Tianjin, P.R.China.ORCID 0000-0001-7250-8813
Shuangyong YanTianjin Institute of Crop Research, Tianjin Academy of Agricultural Sciences, Tianjin, P.R.China.ORCID 0000-0002-9696-4984
Wenjing LiNational Clinical Research Center of Kidney Disease, Jinling Hospital, Nanjing University School of Medicine, Nanjing, China.ORCID 0000-0002-8931-5433
Xiurong YangKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, Qinghai, P.R.China.ORCID 0000-0002-9489-9445
Zhongqiu CuiTianjin Institute of Crop Research, Tianjin Academy of Agricultural Sciences, Tianjin, P.R.China.ORCID 0009-0006-6081-5342
Junling LiTianjin Institute of Crop Research, Tianjin Academy of Agricultural Sciences, Tianjin, P.R.China.ORCID 0009-0005-6847-6229
Guangsheng LiKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, Qinghai, P.R.China.ORCID 0009-0008-6465-2290
Yuejiao LiKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, Qinghai, P.R.China.ORCID 0000-0002-2181-2484
Yanping HuQinghai Provincial Key Laboratory of Qinghai-Tibet Plateau Biological Resources, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, Qinghai, P.R.China.ORCID 0000-0002-5770-2527
Shan GaoCollege of Life Sciences, Nankai University, Tianjin, P.R.China.ORCID 0000-0002-8919-1338
Institute of Plant Protection · CNTianjin Academy of Agricultural Sciences · CNChinese Academy of Sciences · CNNankai University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chloroplast and mitochondrial DNA (cpDNA and mtDNA) are apart from nuclear DNA (nuDNA) in a eukaryotic cell. The transcription system of chloroplasts differs from those of mitochondria and eukaryotes. In contrast to nuDNA and animal mtDNA, the transcription of cpDNA is still not well understood, primarily due to the unresolved identification of transcription initiation sites (TISs) and transcription termination sites (TTSs) on the genome scale. In the present study, we characterized the transcription of chloroplast (cp) genes with greater accuracy and comprehensive information using PacBio full-length transcriptome data from

Indexed as

ArabidopsisGenome, ChloroplastAnimalsChloroplastsDNA, MitochondrialGene Expression ProfilingMolecular Sequence AnnotationTranscriptomeDNA, MitochondrialArabidopsis thalianaAT-rich regionpolyA-like siteTISTTS

Identifiers

PMID37231782
PMCPMC10228390
OpenAlexW4378347883

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.