Evidence map›Paper›PMID 37231288›Full record

ArticleJournal of digital imaging2023

A Lightweight and Robust Framework for Circulating Genetically Abnormal Cells (CACs) Identification Using 4-Color Fluorescence In Situ Hybridization (FISH) Image and Deep Refined Learning.

Xu Xu, Congsheng Li, Xingjie Lan, Xianjun Fan, Xing Lv, Xin Ye, Tongning Wu

Abstract read
In one paragraph

Article in Journal of digital imaging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

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0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xu XuChina Academy of Information and Communications Technology, No.52, Huayuan bei Road, 100191, Beijing, China.
Congsheng LiChina Academy of Information and Communications Technology, No.52, Huayuan bei Road, 100191, Beijing, China.
Xingjie LanZhuhai Sanmed Biotech Ltd, Zhuhai, 519060, Guangdong, China.
Xianjun FanZhuhai Sanmed Biotech Ltd, Zhuhai, 519060, Guangdong, China.
Xing LvZhuhai Sanmed Biotech Ltd, Zhuhai, 519060, Guangdong, China.
Xin YeZhuhai Sanmed Biotech Ltd, Zhuhai, 519060, Guangdong, China.
Tongning WuChina Academy of Information and Communications Technology, No.52, Huayuan bei Road, 100191, Beijing, China. wutongning@caict.ac.cn.ORCID 0000-0002-9894-9518

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circulating genetically abnormal cells (CACs) constitute an important biomarker for cancer diagnosis and prognosis. This biomarker offers high safety, low cost, and high repeatability, which can serve as a key reference in clinical diagnosis. These cells are identified by counting fluorescence signals using 4-color fluorescence in situ hybridization (FISH) technology, which has a high level of stability, sensitivity, and specificity. However, there are some challenges in CACs identification, due to the difference in the morphology and intensity of staining signals. In this concern, we developed a deep learning network (FISH-Net) based on 4-color FISH image for CACs identification. Firstly, a lightweight object detection network based on the statistical information of signal size was designed to improve the clinical detection rate. Secondly, the rotated Gaussian heatmap with a covariance matrix was defined to standardize the staining signals with different morphologies. Then, the heatmap refinement model was proposed to solve the fluorescent noise interference of 4-color FISH image. Finally, an online repetitive training strategy was used to improve the model's feature extraction ability for hard samples (i.e., fracture signal, weak signal, and adjacent signals). The results showed that the precision was superior to 96%, and the sensitivity was higher than 98%, for fluorescent signal detection. Additionally, validation was performed using the clinical samples of 853 patients from 10 centers. The sensitivity was 97.18% (CI 96.72-97.64%) for CACs identification. The number of parameters of FISH-Net was 2.24 M, compared to 36.9 M for the popularly used lightweight network (YOLO-V7s). The detection speed was about 800 times greater than that of a pathologist. In summary, the proposed network was lightweight and robust for CACs identification. It could greatly increase the review accuracy, enhance the efficiency of reviewers, and reduce the review turnaround time during CACs identification.

Indexed as

Image Interpretation, Computer-AssistedIn Situ Hybridization, FluorescenceCirculating genetically abnormal cellDeep learningFluorescence in situ hybridizationObject detection

Identifiers

PMID37231288
PMCPMC10406746

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.