Evidence map›Paper›PMID 37231057›Full record

ArticleScientific reports2023

Magnetic DNA random access memory with nanopore readouts and exponentially-scaled combinatorial addressing.

Billy Lau, Shubham Chandak, Sharmili Roy, Kedar Tatwawadi, Mary Wootters, Tsachy Weissman, Hanlee P Ji

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. DNA storage: The future direction for medical cold data storage.Synthetic and systems biotechnology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Billy Lau *Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Shubham Chandak *Department of Electrical Engineering, Stanford University, Stanford, CA, 94305, USA.
Sharmili RoyDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Kedar TatwawadiDepartment of Electrical Engineering, Stanford University, Stanford, CA, 94305, USA.
Mary WoottersDepartment of Electrical Engineering, Stanford University, Stanford, CA, 94305, USA.
Tsachy WeissmanDepartment of Electrical Engineering, Stanford University, Stanford, CA, 94305, USA. tsachy@stanford.edu.
Hanlee P JiDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA. genomics_ji@stanford.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The storage of data in DNA typically involves encoding and synthesizing data into short oligonucleotides, followed by reading with a sequencing instrument. Major challenges include the molecular consumption of synthesized DNA, basecalling errors, and limitations with scaling up read operations for individual data elements. Addressing these challenges, we describe a DNA storage system called MDRAM (Magnetic DNA-based Random Access Memory) that enables repetitive and efficient readouts of targeted files with nanopore-based sequencing. By conjugating synthesized DNA to magnetic agarose beads, we enabled repeated data readouts while preserving the original DNA analyte and maintaining data readout quality. MDRAM utilizes an efficient convolutional coding scheme that leverages soft information in raw nanopore sequencing signals to achieve information reading costs comparable to Illumina sequencing despite higher error rates. Finally, we demonstrate a proof-of-concept DNA-based proto-filesystem that enables an exponentially-scalable data address space using only small numbers of targeting primers for assembly and readout.

Indexed as

NanoporesDNAHigh-Throughput Nucleotide SequencingMagnetic PhenomenaOligonucleotidesSequence Analysis, DNADNAOligonucleotides

Identifiers

PMID37231057
PMCPMC10213054

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.