Evidence map›Paper›PMID 37230988›Full record

ArticleNature communications2023

Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer.

Xudong Pei, Liqi Zhou, Chen Huang, Mark Boyce, Judy S Kim, Emanuela Liberti, Yiming Hu, Takeo Sasaki, Peter D Nellist, Peijun Zhang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
13.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Extending the reach of single-particle cryoEM.Current opinion in structural biology · 2025
    Review
  9. Article
  10. Review
  11. Ptychography at all wavelengths.Nature reviews. Methods primers · 2025
    Article
  12. Article
  13. Review
  14. Article
  15. X-Ray Multibeam Ptychography at up to 20 keV: Nano-Lithography Enhances X-Ray Nano-Imaging.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  16. Article
  17. Integrative Approaches to Study Virus Structures.Sub-cellular biochemistry · 2024
    Review
  18. Cryo-electron tomography to study viral infection.Biochemical Society transactions · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 3 countries.

Xudong Pei *National Laboratory of Solid State Microstructures, Jiangsu Key Laboratory of Artificial Functional Materials, College of Engineering and Applied Sciences and Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China.
Liqi Zhou *National Laboratory of Solid State Microstructures, Jiangsu Key Laboratory of Artificial Functional Materials, College of Engineering and Applied Sciences and Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China.ORCID http://orcid.org/0000-0002-6498-4518
Chen Huang *The Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0002-7864-8427
Mark BoyceDivision of Structural Biology, Welcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-1687-4848
Judy S KimThe Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0003-1513-9964
Emanuela LibertiThe Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0001-5306-7936
Yiming HuNational Laboratory of Solid State Microstructures, Jiangsu Key Laboratory of Artificial Functional Materials, College of Engineering and Applied Sciences and Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China.
Takeo SasakiJEOL Ltd, Tokyo, Japan.ORCID http://orcid.org/0000-0001-7838-7741
Peter D NellistDepartment of Materials, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-5883-6463
Peijun ZhangDivision of Structural Biology, Welcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-1803-691X
David I StuartDivision of Structural Biology, Welcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Angus I KirklandThe Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK. angus.kirkland@materials.ox.ac.uk.ORCID http://orcid.org/0000-0001-8068-1990
Peng WangNational Laboratory of Solid State Microstructures, Jiangsu Key Laboratory of Artificial Functional Materials, College of Engineering and Applied Sciences and Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China. peng.wang.3@warwick.ac.uk.ORCID http://orcid.org/0000-0003-0788-6687
Centre for Human Genetics · GBCollaborative Innovation Center of Advanced Microstructures · CNRosalind Franklin Institute · GBUniversity of Oxford · GBUniversity of Warwick · GBDiamond Light Source · GBJEOL (Japan) · JP

Funding

X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CALERO, GUILLERMO ALBERTO · 2007 to 2018
$48.1M
Medical Research Council MR/N00065X/1Medical Research Council MR/V001329/1NIGMS NIH HHS P50 GM082251
6 · The paper itself

Abstract

Advances in cryogenic transmission electron microscopy have revolutionised the determination of many macromolecular structures at atomic or near-atomic resolution. This method is based on conventional defocused phase contrast imaging. However, it has limitations of weaker contrast for small biological molecules embedded in vitreous ice, in comparison with cryo-ptychography, which shows increased contrast. Here we report a single-particle analysis based on the use of ptychographic reconstruction data, demonstrating that three dimensional reconstructions with a wide information transfer bandwidth can be recovered by Fourier domain synthesis. Our work suggests future applications in otherwise challenging single particle analyses, including small macromolecules and heterogeneous or flexible particles. In addition structure determination in situ within cells without the requirement for protein purification and expression may be possible.

Identifiers

PMID37230988
PMCPMC10212999
OpenAlexW4378176121

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.