Evidence map›Paper›PMID 37227820›Full record

ArticleCell reports2023

Spatial single-cell sequencing of meiosis I arrested oocytes indicates acquisition of maternal transcripts from the soma.

Kenneth A Trimmer, Peisen Zhao, Jacob Seemann, Shin-Yu Chen, Sudip Mondal, Adela Ben-Yakar, Swathi Arur

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kenneth A TrimmerDepartment of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Peisen ZhaoDepartment of Electrical and Computer Engineering, University of Texas at Austin, Austin, TX 78712, USA.
Jacob SeemannDepartment of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Shin-Yu ChenDepartment of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Sudip MondalDepartment of Mechanical Engineering, University of Texas at Austin, Austin, TX 78712, USA.
Adela Ben-YakarDepartment of Electrical and Computer Engineering, University of Texas at Austin, Austin, TX 78712, USA; Department of Mechanical Engineering, University of Texas at Austin, Austin, TX 78712, USA.
Swathi ArurDepartment of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address: sarur@mdanderson.org.
The University of Texas MD Anderson Cancer Center · USThe University of Texas at Austin · US

Funding

Training in Precision Environmental Health SciencesT32ES027801 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Cheryl L. Walker · 2018 to 2026
$2.8M
How Post-Translational Codes and Small RNA Pathways Shape Developmental OutcomesR35GM140933 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Swathi Arur · 2021 to 2026
$2.5M
ERK mediated regulation of RbAp46/48 during female germ cell developmentR01HD101269 · NICHD · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI ARUR, SWATHI · 2020 to 2024
$1.6M
Femtosecond Laser Microdissection to Isolate Single Intact Neurons for Nerve Regeneration StudiesR21NS109821 · NINDS · UNIVERSITY OF TEXAS AT AUSTIN · PI BEN-YAKAR, ADELA · 2019 to 2019
$430k
NICHD NIH HHS R01 HD101269NIEHS NIH HHS T32 ES027801NIGMS NIH HHS R35 GM140933NINDS NIH HHS R21 NS109821
6 · The paper itself

Abstract

Maternal RNAs are stored from minutes to decades in oocytes throughout meiosis I arrest in a transcriptionally quiescent state. Recent reports, however, propose a role for nascent transcription in arrested oocytes. Whether arrested oocytes launch nascent transcription in response to environmental or hormonal signals while maintaining the meiosis I arrest remains undetermined. We test this by integrating single-cell RNA sequencing, RNA velocity, and RNA fluorescence in situ hybridization on C. elegans meiosis I arrested oocytes. We identify transcripts that increase as the arrested meiosis I oocyte ages, but rule out extracellular signaling through ERK MAPK and nascent transcription as a mechanism for this increase. We report transcript acquisition from neighboring somatic cells as a mechanism of transcript increase during meiosis I arrest. These analyses provide a deeper view at single-cell resolution of the RNA landscape of a meiosis I arrested oocyte and as it prepares for oocyte maturation and fertilization.

Indexed as

Caenorhabditis elegansOocytesAnimalsIn Situ Hybridization, FluorescenceMeiosisRNARNAC. elegansCP: Developmental biologyCP: Molecular biologyMaternal TranscriptsOocytesSingle Cell Sequencing

Identifiers

PMID37227820
PMCPMC10592488
OpenAlexW4377987515

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.