Evidence map›Paper›PMID 37224818›Full record

ArticlePhysical biology2023

PyEcoLib: a python library for simulating stochastic cell size dynamics.

César Nieto, Sergio Camilo Blanco, César Vargas-García, Abhyudai Singh, Pedraza Juan Manuel

Abstract read
In one paragraph

Article in Physical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
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  5. A GeneralizedbioRxiv : the preprint server for biology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

César NietoDepartment of Electrical and Computer Engineering, University of Delaware, Newark, DE 19716, United States of America.ORCID 0000-0001-6504-4619
Sergio Camilo BlancoDepartment of Mathematics and Engineering. Fundacion Universitaria Konrad Lorenz, Bogota, Colombia.ORCID 0009-0006-4304-1453
César Vargas-GarcíaCorporacion Colombiana de Investigacion Agropecuaria, Mosquera, Colombia.ORCID 0000-0002-4286-8882
Abhyudai SinghDepartment of Electrical and Computer Engineering, Department of Biomedical Engineering and Department of Mathematical Sciences, University of Delaware, Newark, DE 19716, United States of America.ORCID 0000-0002-1451-2838
Pedraza Juan ManuelDepartment of Physics. Universidad de los Andes, Bogotá, Colombia.ORCID 0000-0002-1802-3337

Funding

Generalized fluctuation test for deciphering phenotypic switching within cell populationsR35GM148351 · NIGMS · UNIVERSITY OF DELAWARE · PI Abhyudai Singh · 2023 to 2026
$1.6M
NIGMS NIH HHS R35 GM148351
6 · The paper itself

Abstract

Recently, there has been an increasing need for tools to simulate cell size regulation due to important applications in cell proliferation and gene expression. However, implementing the simulation usually presents some difficulties, as the division has a cycle-dependent occurrence rate. In this article, we gather a recent theoretical framework in

Indexed as

Models, BiologicalCell CycleCell DivisionCell ProliferationCell SizeComputer SimulationStochastic Processescell sizegene expressionstochastic simulation

Identifiers

PMID37224818
PMCPMC10665115

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.