Evidence map›Paper›PMID 37223975›Full record

ArticleActa crystallographica. Section F, Structural biology communications2023

Crystal structure of a three-tetrad, parallel, K

E V Chen, J M Nicoludis, B M Powell, K S Li, L A Yatsunyk

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

E V ChenChemistry and Biochemistry, Swarthmore College, 500 College Avenue, Swarthmore, PA 19081, USA.ORCID 0000-0002-1546-7899
J M NicoludisChemistry and Biochemistry, Swarthmore College, 500 College Avenue, Swarthmore, PA 19081, USA.ORCID 0000-0002-3755-7844
B M PowellChemistry and Biochemistry, Swarthmore College, 500 College Avenue, Swarthmore, PA 19081, USA.
K S LiChemistry and Biochemistry, Swarthmore College, 500 College Avenue, Swarthmore, PA 19081, USA.
L A YatsunykChemistry and Biochemistry, Swarthmore College, 500 College Avenue, Swarthmore, PA 19081, USA.ORCID 0000-0003-3946-0939
Swarthmore College · US

Funding

Deciphering the structure and dynamics of non-canonical DNA implicated in cancerR15CA253134 · NCI · SWARTHMORE COLLEGE · PI YATSUNYK, LILIYA A · 2020 to 2020
$432k
National Institutes of Health, National Cancer Institute 1R15CA253134NCI NIH HHS R15 CA253134
6 · The paper itself

Abstract

The crystal structure of the G-rich human telomeric DNA Tel22 has been determined at 1.35 Å resolution in space group P6. Tel22 forms a non-canonical DNA structure called the G-quadruplex. The space group and unit-cell parameters are comparable to those in the crystal structures with PDB codes 6ip3 (1.40 Å resolution) and 1kf1 (2.15 Å resolution). The G-quadruplexes are highly similar in all of the structures. However, this structure of Tel22 displays clear density for polyethylene glycol and two potassium ions, which are located outside the ion channel in the G-quadruplex and play an important role in stabilizing the crystal contacts. In addition, 111 water molecules were identified (compared with 79 and 68 in PDB entries 6ip3 and 1kf1, respectively) that participate in intricate and extensive networks providing high stability to the G-quadruplex.

Indexed as

G-QuadruplexesCrystallography, X-RayDNAHumansIonsNucleic Acid ConformationPotassiumTelomereDNAIonsPotassiumhuman telomeric DNAparallel G-quadruplexpolyethylene glycolpropeller loopsthree tetrads

Identifiers

PMID37223975
PMCPMC10231262
OpenAlexW4377940922

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.