Evidence map›Paper›PMID 37222519›Full record

ArticlemSystems2023

Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes.

Jose M Haro-Moreno, Mario López-Pérez, Alexey Alekseev, Elizaveta Podoliak, Kirill Kovalev, Valentin Gordeliy, Ramunas Stepanauskas, Francisco Rodriguez-Valera

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mSystems, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 4 countries.

Jose M Haro-MorenoEvolutionary Genomics Group, Departamento Producción Vegetal y Microbiología, Universidad Miguel Hernández , Alicante, Spain.ORCID 0000-0002-2113-9269
Mario López-PérezEvolutionary Genomics Group, Departamento Producción Vegetal y Microbiología, Universidad Miguel Hernández , Alicante, Spain.ORCID 0000-0002-3996-6780
Alexey AlekseevInstitute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen , Göttingen, Germany.
Elizaveta PodoliakDepartment of Ophthalmology, Universitäts-Augenklinik Bonn , Bonn, Germany.
Kirill KovalevEuropean Molecular Biology Laboratory (EMBL) , Hamburg, Germany.
Valentin GordeliyInstitut de Biologie Structurale J.-P. Ebel, Université Grenoble Alpes-Commission for Atomic Energy , Grenoble, France.
Ramunas StepanauskasBigelow Laboratory for Ocean Sciences , East Boothbay, Maine, USA.
Francisco Rodriguez-ValeraEvolutionary Genomics Group, Departamento Producción Vegetal y Microbiología, Universidad Miguel Hernández , Alicante, Spain.ORCID 0000-0002-9809-2059
Universitat de Miguel Hernández d'Elx · ESBigelow Laboratory for Ocean Sciences · USEuropean Molecular Biology Laboratory · DEForschungszentrum Jülich · DEUniversitäts-Augenklinik Bonn · DEUniversitätsmedizin Göttingen · DE

Funding

German Research Foundation to Dr. Tobias Moser via the Multiscale Bioimaging - Cluster of Excellence EXC 2067/1-390729940Simons Foundation 510023Simons Foundation 827839Spanish Ministerio de Economía, Industria y Competitividad "FLEX3GEN" PID2020-118052GB-I00Spanish Ministerio de Universidades and the European Union -- Next Generation EU 2021/PER/00020
6 · The paper itself

Abstract

Microbial rhodopsins are found more than once in a single genome (paralogs) often have different functions. We screened a large dataset of open ocean single-amplified genomes (SAGs) for co-occurrences of multiple rhodopsin genes. Many such cases were found among Pelagibacterales (SAR11), HIMB59, and the Gammaproteobacteria

Indexed as

RhodopsinRhodopsins, MicrobialBacteriaMembrane ProteinsflotillinsMembrane ProteinsproteorhodopsinRhodopsinRhodopsins, MicrobialmetagenomicsPelagibacteralesrhodopsinrhodopsin paralogssingle-amplified genomesstreamlined genomes

Identifiers

PMID37222519
PMCPMC10308929
OpenAlexW4377940246

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.