Evidence map›Paper›PMID 37222450›Full record

ArticleJournal of neurophysiology2023

Stimulation-mediated reverse engineering of silent neural networks.

Xiaoxuan Ren, Ilhan Bok, Adam Vareberg, Aviad Hai

Abstract read
In one paragraph

Article in Journal of neurophysiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xiaoxuan RenDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0000-0002-6583-2612
Ilhan BokDepartment of Electrical and Computer Engineering, University of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0000-0002-4481-7843
Adam VarebergDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0000-0002-5872-447X
Aviad HaiDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0000-0002-4556-3048

Funding

Achieving Direct Functional Imaging of Brain Electrophysiology: Nanofabricated Cell-sized Electronic Sensors for Magnetic Resonance ImagingDP2NS122605 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI HAI, AVIAD · 2020 to 2020
$2.3M
Wireless Sensors for Functional MRI of Brain SeizuresK01EB027184 · NIBIB · UNIVERSITY OF WISCONSIN-MADISON · PI HAI, AVIAD · 2019 to 2020
$346k
NIBIB NIH HHS K01 EB027184NINDS NIH HHS DP2 NS122605
6 · The paper itself

Abstract

Reconstructing connectivity of neuronal networks from single-cell activity is essential to understanding brain function, but the challenge of deciphering connections from populations of silent neurons has been largely unmet. We demonstrate a protocol for deriving connectivity of simulated silent neuronal networks using stimulation combined with a supervised learning algorithm, which enables inferring connection weights with high fidelity and predicting spike trains at the single-spike and single-cell levels with high accuracy. We apply our method on rat cortical recordings fed through a circuit of heterogeneously connected leaky integrate-and-fire neurons firing at typical lognormal distributions and demonstrate improved performance during stimulation for multiple subpopulations. These testable predictions about the number and protocol of the required stimulations are expected to enhance future efforts for deriving neuronal connectivity and drive new experiments to better understand brain function.

Indexed as

Neural Networks, ComputerNeuronsAction PotentialsAlgorithmsAnimalsNerve NetRatsconnectivitymicroelectrode arraysreverse engineeringsupervised learning

Identifiers

PMID37222450
PMCPMC10311990

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.