Evidence map›Paper›PMID 37220537›Full record

ReviewaBIOTECH2023

Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways.

Feng Zhu, Weiwei Wen, Yunjiang Cheng, Saleh Alseekh, Alisdair R Fernie

Open access · hybridAbstract readReview
In one paragraph

Review in aBIOTECH, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Harnessing neo-domestication of wild pigmented rice for enhanced nutrition and sustainable agriculture.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  6. Review
  7. Review
  8. Combining Short- and Long-Read Transcriptomes for Targeted Enzyme Discovery.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  9. Identification of chalcone isomerase gene family inFrontiers in plant science · 2025
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Feng ZhuNational R&D Center for Citrus Preservation, Hubei Hongshan Laboratory, National Key Laboratory for Germplasm Innovation and Utilization for Fruit and Vegetable Horticultural Crops, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070 China.
Weiwei WenNational R&D Center for Citrus Preservation, Hubei Hongshan Laboratory, National Key Laboratory for Germplasm Innovation and Utilization for Fruit and Vegetable Horticultural Crops, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070 China.
Yunjiang ChengNational R&D Center for Citrus Preservation, Hubei Hongshan Laboratory, National Key Laboratory for Germplasm Innovation and Utilization for Fruit and Vegetable Horticultural Crops, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070 China.
Saleh AlseekhMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476 Germany.
Alisdair R FernieMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476 Germany.ORCID 0000-0001-9000-335X
Huazhong Agricultural University · CNCenter of Plant Systems Biology and Biotechnology · BG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants are the most important sources of food for humans, as well as supplying many ingredients that are of great importance for human health. Developing an understanding of the functional components of plant metabolism has attracted considerable attention. The rapid development of liquid chromatography and gas chromatography, coupled with mass spectrometry, has allowed the detection and characterization of many thousands of metabolites of plant origin. Nowadays, elucidating the detailed biosynthesis and degradation pathways of these metabolites represents a major bottleneck in our understanding. Recently, the decreased cost of genome and transcriptome sequencing rendered it possible to identify the genes involving in metabolic pathways. Here, we review the recent research which integrates metabolomic with different omics methods, to comprehensively identify structural and regulatory genes of the primary and secondary metabolic pathways. Finally, we discuss other novel methods that can accelerate the process of identification of metabolic pathways and, ultimately, identify metabolite function(s).

Indexed as

Crop improvementGenomeMetabolomeTranscriptome

Identifiers

PMID37220537
PMCPMC10199974
OpenAlexW4315646333

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.