Evidence map›Paper›PMID 37219749›Full record

ArticlePlanta2023

An exonuclease V homologue is expressed predominantly during early megasporogenesis in apomictic Brachiaria brizantha.

Diva M A Dusi, Elizângela R Alves, Gláucia B Cabral, Luciane V Mello, Daniel J Rigden, Érica D Silveira, Márcio Alves-Ferreira, Larissa A Guimarães, Ana Cristina M M Gomes, Júlio C M Rodrigues and 1 more

Abstract read
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In one paragraph

Article in Planta, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Research Advances in Multiple Embryos and Apomixis in Rice (International journal of molecular sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Diva M A DusiBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx. Postal 02372, Brasilia, DF, 70770-917, Brazil.
Elizângela R AlvesBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx. Postal 02372, Brasilia, DF, 70770-917, Brazil.
Gláucia B CabralBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx. Postal 02372, Brasilia, DF, 70770-917, Brazil.
Luciane V MelloSchool of Life Sciences, University of Liverpool, Crown St, Liverpool, L69 7ZB, UK.
Daniel J RigdenInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown St, Liverpool, L69 7ZB, UK.
Érica D SilveiraBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx. Postal 02372, Brasilia, DF, 70770-917, Brazil.
Márcio Alves-FerreiraDepartment of Genetics, Universidade Federal do Rio de Janeiro, Av. Prof. Rodolpho Paulo Rocco, s/n Prédio do CCS Instituto de Biologia, Rio de Janeiro, RJ, Brazil.
Larissa A GuimarãesBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx. Postal 02372, Brasilia, DF, 70770-917, Brazil.
Ana Cristina M M GomesBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx. Postal 02372, Brasilia, DF, 70770-917, Brazil.
Júlio C M RodriguesBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx. Postal 02372, Brasilia, DF, 70770-917, Brazil. julio.carlyle@embrapa.br.ORCID http://orcid.org/0000-0001-7251-456X
Vera T C CarneiroBrazilian Agricultural Research Corporation (Embrapa), Embrapa Genetic Resources and Biotechnology, Cx. Postal 02372, Brasilia, DF, 70770-917, Brazil. vera.carneiro@embrapa.br.ORCID http://orcid.org/0000-0002-5981-9024
Brazilian Agricultural Research Corporation · BRUniversidade de Brasília · BRUniversidade Federal do Rio de Janeiro · BRUniversity of Liverpool · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionAn exonuclease V homologue from apomictic Brachiaria brizantha is expressed and localized in nucellar cells at key moments when these cells differentiate to give rise to unreduced gametophytes. Brachiaria is a genus of forage grasses with economical and agricultural importance to Brazil. Brachiaria reproduces by aposporic apomixis, in which unreduced embryo sacs, derived from nucellar cells, other than the megaspore mother cell (MMC), are formed. The unreduced embryo sacs produce an embryo without fertilization resulting in clones of the mother plant. Comparative gene expression analysis in ovaries of sexual and apomictic Brachiaria spp. revealed a sequence from B. brizantha that showed a distinct pattern of expression in ovaries of sexual and apomictic plants. In this work, we describe a gene named BbrizExoV with strong identity to exonuclease V (Exo V) genes from other grasses. Sequence analysis in signal prediction tools showed that BbrizExoV might have dual localization, depending on the translation point. A longer form to the nucleus and a shorter form which would be directed to the chloroplast. This is also the case for monocot sequences analyzed from other species. The long form of BbrizExoV protein localizes to the nucleus of onion epidermal cells. Analysis of ExoV proteins from dicot species, with exception of Arabidopsis thaliana ExoVL protein, showed only one localization. Using a template-based AlphaFold 2 modelling approach the structure of BbrizExoV in complex with metal and ssDNA was predicted based on the holo structure of the human counterpart. Features predicted to define ssDNA binding but a lack of sequence specificity are shared between the human enzyme and BbrizExoV. Expression analyses indicated the precise site and timing of transcript accumulation during ovule development, which coincides with the differentiation of nucelar cells to form the typical aposporic four-celled unreduced gametophyte. A putative function for this protein is proposed based on its homology and expression pattern.

Indexed as

ApomixisArabidopsisBrachiariaExodeoxyribonuclease VGametogenesis, PlantGerm Cells, PlantHumansPoaceaeExodeoxyribonuclease VApomixisAposporyMegagametogenesisMegasporogenesisOvule

Identifiers

PMID37219749
OpenAlexW4377564220

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.