Evidence map›Paper›PMID 37219435›Full record

ArticleApplied and environmental microbiology2023

Rapid Detection of DNA and RNA Shrimp Viruses Using CRISPR-Based Diagnostics.

Samuel R Major, Matthew J Harke, Roberto Cruz-Flores, Arun K Dhar, Andrea G Bodnar, Shelly A Wanamaker

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. CRISPR/Cas system and its application in the diagnosis of animal infectious diseases.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Samuel R MajorGloucester Marine Genomics Institute, Gloucester, Massachusetts, USA.ORCID 0000-0003-4341-1523
Matthew J HarkeGloucester Marine Genomics Institute, Gloucester, Massachusetts, USA.ORCID 0000-0003-3451-3042
Roberto Cruz-FloresAquaculture Pathology Laboratory, School of Animal and Comparative Biomedical Sciences, The University of Arizona, Tucson, Arizona, USA.
Arun K DharAquaculture Pathology Laboratory, School of Animal and Comparative Biomedical Sciences, The University of Arizona, Tucson, Arizona, USA.
Andrea G BodnarGloucester Marine Genomics Institute, Gloucester, Massachusetts, USA.
Shelly A WanamakerGloucester Marine Genomics Institute, Gloucester, Massachusetts, USA.ORCID 0000-0001-6904-4149

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Timely detection of persistent and emerging pathogens is critical to controlling disease spread, particularly in high-density populations with increased contact between individuals and limited-to-no ability to quarantine. Standard molecular diagnostic tests for surveying pathogenic microbes have provided the sensitivity needed for early detection, but lag in time-to-result leading to delayed action. On-site diagnostics alleviate this lag, but current technologies are less sensitive and adaptable than lab-based molecular methods. Towards the development of improved on-site diagnostics, we demonstrated the adaptability of a loop-mediated isothermal amplification-CRISPR coupled technology for detecting DNA and RNA viruses that have greatly impacted shrimp populations worldwide; White Spot Syndrome Virus and Taura Syndrome Virus. Both CRISPR-based fluorescent assays we developed showed similar sensitivity and accuracy for viral detection and load quantification to real-time PCR. Additionally, both assays specifically targeted their respective virus with no false positives detected in animals infected with other common pathogens or in certified specific pathogen-free animals.

Indexed as

PenaeidaeRNA VirusesAnimalsDicistroviridaeDNARNASensitivity and SpecificityDNARNAassay developmentdiagnosticspathogensrapid tests

Identifiers

PMID37219435
PMCPMC10304985

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.