ArticleBMC genomics2023
Whole genome sequencing and analysis of Armillaria gallica Jzi34 symbiotic with Gastrodia elata.
Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed, 12 citations in OpenAlex.
- Armillaria mellea sensu lato and related Armillaria species at the crossroads of taxonomy, ecology, and biotechnology: a multi-dimensional review.Archives of microbiology · 2026Review
- Review
- Characterization of Six Complete Mitochondrial Genomes and ITS Sequences fromInternational journal of molecular sciences · 2026Article
- Article
- Whole-genome sequencing and analysis of the symbiotic Mycena sp. L02 with Gastrodia Elata.BMC genomics · 2025Article
- Characteristics and functions of volatile organic compounds in the tripartite symbiotic system ofPlant signaling & behavior · 2024Article
- Variation in SSRs at different genomic regions and implications for the evolution and identification of Armillaria gallica.PloS one · 2024Article
- Hallmarks of Comparative Transcriptome between Rhizomorphs and Hyphae ofMicroorganisms · 2023Article
- The role of symbiotic fungi in the life cycle ofFrontiers in plant science · 2023Review
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
Abstract
backgroundArmillaria species are plant pathogens, but a few Armillaria species can establish a symbiotic relationship with Gastrodia elata, a rootless and leafless orchid, that is used as a Chinese herbal medicine. Armillaria is a nutrient source for the growth of G. elata. However, there are few reports on the molecular mechanism of symbiosis between Armillaria species and G. elata. The genome sequencing and analysis of Armillaria symbiotic with G. elata would provide genomic information for further studying the molecular mechanism of symbiosis.
resultsThe de novo genome assembly was performed with the PacBio Sequel platform and Illumina NovaSeq PE150 for the A. gallica Jzi34 strain, which was symbiotic with G. elata. Its genome assembly contained ~ 79.9 Mbp and consisted of 60 contigs with an N50 of 2,535,910 bp. There were only 4.1% repetitive sequences in the genome assembly. Functional annotation analysis revealed a total of 16,280 protein coding genes. Compared with the other five genomes of Armillaria, the carbohydrate enzyme gene family of the genome was significantly contracted, while it had the largest set of glycosyl transferase (GT) genes. It also had an expansion of auxiliary activity enzymes AA3-2 gene subfamily and cytochrome P450 genes. The synteny analysis result of P450 genes reveals that the evolutionary relationship of P450 proteins between A. gallica Jzi34 and other four Armillaria was complex.
conclusionsThese characteristics may be beneficial for establishing a symbiotic relationship with G. elata. These results explore the characteristics of A. gallica Jzi34 from a genomic perspective and provide an important genomic resource for further detailed study of Armillaria. This will help to further study the symbiotic mechanism between A. gallica and G. elata.
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