Evidence map›Paper›PMID 37217701›Full record

ArticleNature materials2023

Photo-expansion microscopy enables super-resolution imaging of cells embedded in 3D hydrogels.

Kemal Arda Günay, Tze-Ling Chang, Nathaniel P Skillin, Varsha V Rao, Laura J Macdougall, Alicia A Cutler, Jason S Silver, Tobin E Brown, Chi Zhang, Chih-Chieh Jay Yu and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature materials, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

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  6. Nuclei sense complex tissue shape and direct intestinal stem cell fate.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Kemal Arda GünayDepartment of Chemical and Biological Engineering and the BioFrontiers Institute, University of Colorado, Boulder, CO, USA.
Tze-Ling ChangDepartment of Chemical and Biological Engineering and the BioFrontiers Institute, University of Colorado, Boulder, CO, USA.
Nathaniel P SkillinDepartment of Chemical and Biological Engineering and the BioFrontiers Institute, University of Colorado, Boulder, CO, USA.ORCID 0000-0003-1424-9037
Varsha V RaoDepartment of Chemical and Biological Engineering and the BioFrontiers Institute, University of Colorado, Boulder, CO, USA.
Laura J MacdougallDepartment of Chemical and Biological Engineering and the BioFrontiers Institute, University of Colorado, Boulder, CO, USA.
Alicia A CutlerDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO, USA.ORCID 0000-0003-3365-0328
Jason S SilverDepartment of Chemical and Biological Engineering and the BioFrontiers Institute, University of Colorado, Boulder, CO, USA.
Tobin E BrownDepartment of Chemical and Biological Engineering and the BioFrontiers Institute, University of Colorado, Boulder, CO, USA.
Chi ZhangMcGovern Institute, MIT, Cambridge, MA, USA.
Chih-Chieh Jay YuMcGovern Institute, MIT, Cambridge, MA, USA.
Bradley B OlwinDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO, USA.ORCID 0000-0001-6977-2509
Edward S BoydenMcGovern Institute, MIT, Cambridge, MA, USA.
Kristi S AnsethDepartment of Chemical and Biological Engineering and the BioFrontiers Institute, University of Colorado, Boulder, CO, USA. Kristi.anseth@colorado.edu.ORCID 0000-0002-5725-5691
University of Colorado Boulder · USMcGovern Institute for Brain Research · US

Funding

The Role of Syndecans in Satellite Cell FunctionR01AR049446 · NIAMS · UNIVERSITY OF COLORADO AT BOULDER · PI Bradley B Olwin · 2005 to 2026
$7.2M
Osteogenic Hydrogel Niches to Promote hMSC Migration and DifferentiationR01DE016523 · NIDCR · UNIVERSITY OF COLORADO AT BOULDER · PI ANSETH, KRISTI S. · 2005 to 2023
$6.2M
Replicative Potential of Muscle Stem CellsR01AR070360 · NIAMS · UNIVERSITY OF COLORADO · PI Bradley B Olwin · 2017 to 2026
$4.2M
Synthetic hydrogels to study formation and maintenance of intestinal cryptsR01DK120921 · NIDDK · UNIVERSITY OF COLORADO · PI KRISTI S. ANSETH, PETER J DEMPSEY · 2019 to 2026
$3.8M
Opera Phenix High Throughput and High Content Confocal MicroscopeS10OD025072 · OD · UNIVERSITY OF COLORADO · PI LIU, XUEDONG · 2018 to 2018
$1.1M
FACSAria Fusion Cell SorterS10OD021601 · OD · UNIVERSITY OF COLORADO · PI LIU, XUEDONG · 2016 to 2016
$599k
ImageXpress Micro Cellular Imagining and Analysis SystemS10RR026680 · NCRR · UNIVERSITY OF COLORADO · PI LIU, XUEDONG · 2011 to 2011
$380k
NCRR NIH HHS S10 RR026680NIAMS NIH HHS R01 AR049446NIAMS NIH HHS R01 AR070360NIDCR NIH HHS R01 DE016523NIDDK NIH HHS R01 DK120921NIH HHS S10 OD021601NIH HHS S10 OD025072
6 · The paper itself

Abstract

Hydrogels are extensively used as tunable, biomimetic three-dimensional cell culture matrices, but optically deep, high-resolution images are often difficult to obtain, limiting nanoscale quantification of cell-matrix interactions and outside-in signalling. Here we present photopolymerized hydrogels for expansion microscopy that enable optical clearance and tunable ×4.6-6.7 homogeneous expansion of not only monolayer cell cultures and tissue sections, but cells embedded within hydrogels. The photopolymerized hydrogels for expansion microscopy formulation relies on a rapid photoinitiated thiol/acrylate mixed-mode polymerization that is not inhibited by oxygen and decouples monomer diffusion from polymerization, which is particularly beneficial when expanding cells embedded within hydrogels. Using this technology, we visualize human mesenchymal stem cells and their interactions with nascently deposited proteins at <120 nm resolution when cultured in proteolytically degradable synthetic polyethylene glycol hydrogels. Results support the notion that focal adhesion maturation requires cellular fibronectin deposition; nuclear deformation precedes cellular spreading; and human mesenchymal stem cells display cell-surface metalloproteinases for matrix remodelling.

Indexed as

HydrogelsMicroscopyBiocompatible MaterialsCell Culture TechniquesHumansPolyethylene GlycolsProteinsBiocompatible MaterialsHydrogelsPolyethylene GlycolsProteins

Identifiers

PMID37217701
PMCPMC10590656
OpenAlexW4377245441

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.