Evidence map›Paper›PMID 37217693›Full record

ArticleJournal, genetic engineering & biotechnology2023

Analysis of genetic diversity and population structure of Moroccan date palm (Phoenix dactylifera L.) using SSR and DAMD molecular markers.

Maha Ibrahimi, Najiba Brhadda, Rabea Ziri, Mohamed Fokar, Driss Iraqi, Fatima Gaboun, Mustapha Labhilili, Aicha Habach, Reda Meziani, Jamal Elfadile and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Journal, genetic engineering & biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 14 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Maha IbrahimiBiotechnology Unit, Regional Center of Agricultural Research of Rabat, National Institute of Agricultural Research (INRA), Rabat, Morocco.
Najiba BrhaddaLaboratory of Plant, Animal and Agro-Industry Productions, Faculty of Sciences, University of Ibn Tofail, Kenitra, Morocco.
Rabea ZiriLaboratory of Plant, Animal and Agro-Industry Productions, Faculty of Sciences, University of Ibn Tofail, Kenitra, Morocco.
Mohamed FokarCenter for Biotechnology and Genomics, Texas Tech University, Lubbock, TX, USA.
Driss IraqiBiotechnology Unit, Regional Center of Agricultural Research of Rabat, National Institute of Agricultural Research (INRA), Rabat, Morocco.
Fatima GabounBiotechnology Unit, Regional Center of Agricultural Research of Rabat, National Institute of Agricultural Research (INRA), Rabat, Morocco.
Mustapha LabhililiBiotechnology Unit, Regional Center of Agricultural Research of Rabat, National Institute of Agricultural Research (INRA), Rabat, Morocco.
Aicha HabachBiotechnology Unit, Regional Center of Agricultural Research of Rabat, National Institute of Agricultural Research (INRA), Rabat, Morocco.
Reda MezianiUR Oasis Systems, National Laboratory of Date Palm Tissues Culture, Regional Center of Agricultural Research of Errachidia, National Institute of Agricultural Research (INRA), Rabat, Morocco.
Jamal ElfadileUR Oasis Systems, National Laboratory of Date Palm Tissues Culture, Regional Center of Agricultural Research of Errachidia, National Institute of Agricultural Research (INRA), Rabat, Morocco.
Rabha AbdelwahdBiotechnology Unit, Regional Center of Agricultural Research of Rabat, National Institute of Agricultural Research (INRA), Rabat, Morocco.
Ghizlane DiriaBiotechnology Unit, Regional Center of Agricultural Research of Rabat, National Institute of Agricultural Research (INRA), Rabat, Morocco. ghizlane.diria@inra.ma.
Université Ibn-Tofail · MACenter for Agricultural Research · CNNational Agricultural Research Institute · PGTexas Tech University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDate palm, oasis pivot, plays a vital socio-economic part in the southern area of Morocco. However, with climate change and drought intensity and frequency increasing, the Moroccan palm grove is threatened with significant genetic degradation. Genetic characterization of this resource is key element for the development of effective conservation and management strategies in the current circumstances of climate change and various biotic and abiotic stresses. To evaluate the genetic diversity of date palm populations collected from different Moroccan oases, we used simple sequence repeats (SSR) and directed amplification of mini-satellite DNA (DAMD) markers. Our results showed that used markers could efficiently assess genetic diversity in Phoenix dactylifera L.

resultsA total of 249 and 471 bands were respectively scored for SSR and DAMD, of which 100% and 92.9% were polymorphic. The polymorphic information content (PIC = 0.95), generated by the SSR primer was nearly identical to that generated by the DAMD primer (PIC = 0.98). The resolving power (Rp) was higher in DAMD than SSR (29.46 and 19.51, respectively). Analysis of the molecular variance (AMOVA) based on the combined data sets for both markers revealed a higher variance within populations (75%) than among populations (25%). Principal coordinate analysis (PCoA) and the ascendant hierarchical classification showed that the population of Zagora and Goulmima regions were the closest populations. The STRUCTURE analysis clustering of the 283 tested samples into seven clusters based on their genetic composition.

conclusionThe results drawn from this study will orient genotypes selection strategies for a successful future breeding and conservation program, particularly under climate change context.

Indexed as

Climate changeDAMDDate palmGenetic diversitySSRStructure populations

Identifiers

PMID37217693
PMCPMC10203086
OpenAlexW4377293872

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.