Evidence map›Paper›PMID 37217470›Full record

ArticleNature communications2023

Determining the gas-phase structures of α-helical peptides from shape, microsolvation, and intramolecular distance data.

Ri Wu, Jonas B Metternich, Anna S Kamenik, Prince Tiwari, Julian A Harrison, Dennis Kessen, Hasan Akay, Lukas R Benzenberg, T-W Dominic Chan, Sereina Riniker and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Structure and Stabilities of Solution and Gas Phase Protein Complexes.Journal of the American Society for Mass Spectrometry · 2024
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ri Wu *Laboratorium für Organische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland.ORCID 0000-0002-5028-5484
Jonas B Metternich *Laboratorium für Organische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland.
Anna S Kamenik *Laboratorium für Physikalische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland.ORCID 0000-0001-8657-0036
Prince TiwariLaboratorium für Organische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland.
Julian A HarrisonLaboratorium für Organische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland.
Dennis KessenLaboratorium für Organische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland.
Hasan AkayLaboratorium für Organische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland.
Lukas R BenzenbergLaboratorium für Organische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland.
T-W Dominic ChanDepartment of Chemistry, The Chinese University of Hong Kong, Hong Kong SAR, People's Republic of China.
Sereina RinikerLaboratorium für Physikalische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland. sriniker@ethz.ch.
Renato ZenobiLaboratorium für Organische Chemie, D-CHAB, ETH Zürich, 8093, Zurich, Switzerland. zenobi@org.chem.ethz.ch.ORCID 0000-0001-5211-4358

Funding

Austrian Science Fund FWF J 4568
6 · The paper itself

Abstract

Mass spectrometry is a powerful technique for the structural and functional characterization of biomolecules. However, it remains challenging to accurately gauge the gas-phase structure of biomolecular ions and assess to what extent native-like structures are maintained. Here we propose a synergistic approach which utilizes Förster resonance energy transfer and two types of ion mobility spectrometry (i.e., traveling wave and differential) to provide multiple constraints (i.e., shape and intramolecular distance) for structure-refinement of gas-phase ions. We add microsolvation calculations to assess the interaction sites and energies between the biomolecular ions and gaseous additives. This combined strategy is employed to distinguish conformers and understand the gas-phase structures of two isomeric α-helical peptides that might differ in helicity. Our work allows more stringent structural characterization of biologically relevant molecules (e.g., peptide drugs) and large biomolecular ions than using only a single structural methodology in the gas phase.

Indexed as

GasesPeptidesIonsMass SpectrometryProtein Conformation, alpha-HelicalGasesIonsPeptides

Identifiers

PMID37217470
PMCPMC10203302

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.