Evidence map›Paper›PMID 37216560›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Structural insights into the transcription activation mechanism of the global regulator GlnR from actinobacteria.

Jing Shi, Zhenzhen Feng, Juncao Xu, Fangfang Li, Yuqiong Zhang, Aijia Wen, Fulin Wang, Qian Song, Lu Wang, Hong Cui and 7 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Jing ShiDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.
Zhenzhen FengDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.
Juncao XuKey Laboratory of Synthetic Biology, Chinese Academy of Sciences (CAS) Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, 200032 Shanghai, China.
Fangfang LiDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.
Yuqiong ZhangMOE Key Laboratory of Laser Life Science and Institute of Laser Life Science, College of Biophotonics, South China Normal University, 510631 Guangzhou, Guangdong, China.
Aijia WenDepartment of Biophysics, Zhejiang University School of Medicine, 310058 Hangzhou, China.
Fulin WangDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.
Qian SongDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.
Lu WangDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.
Hong CuiPasteurien College, Suzhou Medical College of Soochow University, Soochow University, 251000 Soochow, China.
Shujuan TongDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.
Peiying ChenDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.
Yejin ZhuDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.ORCID 0000-0001-8988-0013
Guoping ZhaoKey Laboratory of Synthetic Biology, Chinese Academy of Sciences (CAS) Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, 200032 Shanghai, China.
Shuang WangSongshan Lake Materials Laboratory, 523808 Dongguan, Guangdong, China.ORCID 0000-0003-3879-9519
Yu FengDepartment of Biophysics, Zhejiang University School of Medicine, 310058 Hangzhou, China.ORCID 0000-0003-4239-8320
Wei LinDepartment of Pathogen Biology, School of Medicine and Holistic Integrative Medicine, Nanjing University of Chinese Medicine, 210023 Nanjing, China.ORCID 0000-0002-2940-6966
Nanjing University of Chinese Medicine · CNChinese Academy of Sciences · CNSir Run Run Shaw Hospital · CNSoochow University · CNSouth China Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In actinobacteria, an OmpR/PhoB subfamily protein called GlnR acts as an orphan response regulator and globally coordinates the expression of genes responsible for nitrogen, carbon, and phosphate metabolism in actinobacteria. Although many researchers have attempted to elucidate the mechanisms of GlnR-dependent transcription activation, progress is impeded by lacking of an overall structure of GlnR-dependent transcription activation complex (GlnR-TAC). Here, we report a co-crystal structure of the C-terminal DNA-binding domain of GlnR (GlnR_DBD) in complex with its regulatory

Indexed as

ActinobacteriaBacterial ProteinsGene Expression Regulation, BacterialPromoter Regions, GeneticTrans-ActivatorsTranscriptional ActivationBacterial ProteinsTrans-Activatorscryo-EM structurecrystal structureGlnRGlnR-dependent transcription activation complex (GlnR-TAC)Mycobacterium tuberculosis

Identifiers

PMID37216560
PMCPMC10235972
OpenAlexW4377288214

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.