Evidence map›Paper›PMID 37216416›Full record

ArticlePLoS genetics2023

Pbp1 associates with Puf3 and promotes translation of its target mRNAs involved in mitochondrial biogenesis.

Floortje van de Poll, Benjamin M Sutter, Michelle Grace Acoba, Daniel Caballero, Samira Jahangiri, Yu-San Yang, Chien-Der Lee, Benjamin P Tu

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Floortje van de PollDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.
Benjamin M SutterDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.
Michelle Grace AcobaDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.ORCID 0000-0002-0768-069X
Daniel CaballeroDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.ORCID 0000-0001-9232-8991
Samira JahangiriDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.
Yu-San YangDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.
Chien-Der LeeDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.ORCID 0000-0002-6093-9613
Benjamin P TuDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.ORCID 0000-0001-5545-9183
The University of Texas Southwestern Medical Center · USHoward Hughes Medical Institute · US

Funding

METABOLIC SIGNALS DRIVING CELL GROWTH & PROLIFERATIONR01GM094314 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI TU, BENJAMIN P · 2010 to 2019
$3.2M
Redox regulation of protein functions linked to neurodegenerationR01NS115546 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI TU, BENJAMIN P · 2019 to 2023
$2.0M
NIGMS NIH HHS R01 GM094314NINDS NIH HHS R01 NS115546
6 · The paper itself

Abstract

Pbp1 (poly(A)-binding protein-binding protein 1) is a cytoplasmic stress granule marker that is capable of forming condensates that function in the negative regulation of TORC1 signaling under respiratory conditions. Polyglutamine expansions in its mammalian ortholog ataxin-2 lead to spinocerebellar dysfunction due to toxic protein aggregation. Here, we show that loss of Pbp1 in S. cerevisiae leads to decreased amounts of mRNAs and mitochondrial proteins which are targets of Puf3, a member of the PUF (Pumilio and FBF) family of RNA-binding proteins. We found that Pbp1 supports the translation of Puf3-target mRNAs in respiratory conditions, such as those involved in the assembly of cytochrome c oxidase and subunits of mitochondrial ribosomes. We further show that Pbp1 and Puf3 interact through their respective low complexity domains, which is required for Puf3-target mRNA translation. Our findings reveal a key role for Pbp1-containing assemblies in enabling the translation of mRNAs critical for mitochondrial biogenesis and respiration. They may further explain prior associations of Pbp1/ataxin-2 with RNA, stress granule biology, mitochondrial function, and neuronal health.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAnimalsAtaxin-2Carrier ProteinsMammalsOrganelle BiogenesisRNA-Binding ProteinsRNA, MessengerAtaxin-2Carrier ProteinsPBP1 protein, S cerevisiaePUF3 protein, S cerevisiaeRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID37216416
PMCPMC10237644
OpenAlexW4377291337

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.