Evidence map›Paper›PMID 37215141›Full record

ArticleFrontiers in immunology2023

Chromosomal microarray analysis supplements exome sequencing to diagnose children with suspected inborn errors of immunity.

Breanna J Beers, Morgan N Similuk, Rajarshi Ghosh, Bryce A Seifert, Leila Jamal, Michael Kamen, Michael R Setzer, Colleen Jodarski, Rylee Duncan, Devin Hunt and 26 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 5 institutions in 1 country.

Breanna J BeersNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Morgan N SimilukNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Rajarshi GhoshNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Bryce A SeifertNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Leila JamalNational Cancer Institute, National Institutes of Health, Bethesda, MD, United States.
Michael KamenNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Michael R SetzerNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Colleen JodarskiNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Rylee DuncanNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Devin HuntNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Madison MixerNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Wenjia CaoNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Weimin BiBaylor Genetics, Houston, TX, United States.
Daniel VeltriNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Eric KarlinsNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Lingwen ZhangNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Zhiwen LiNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Andrew J OlerNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Kathleen JevtichNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Yunting YuNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Haley HullfishNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Bibiana BielekovaNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Pamela Frischmeyer-GuerrerioNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
An Dang DoEunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, United States.
Laryssa A HurynNational Eye Institute, National Institutes of Health, Bethesda, MD, United States.
Kenneth N OlivierDivision of Pulmonary Diseases and Critical Care Medicine, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.
Helen C SuNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Jonathan J LyonsNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Christa S ZerbeNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
V Koneti RaoNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Michael D KellerNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Alexandra F FreemanNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Steven M HollandNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Luis M FrancoNational Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD, United States.
Magdalena A WalkiewiczNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Jia YanNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
National Institutes of Health · USNational Institute of Allergy and Infectious Diseases · USBaylor College of Medicine · USNational Cancer Institute · USUniversity of North Carolina at Chapel Hill · US

Funding

Infectious Diseases Research Technologies Core - BethesdaZICAI001051 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CHERRY, JAMES · 2009 to 2025
$226.1M
Central Sequencing InitiativeZICAI001244 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI HOLLAND, STEVEN · 2019 to 2025
$24.0M
Defining New Human Immunodeficiency and Immunodysregulation DisordersZIAAI001059 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI SU, HELEN CHUN-HUI · 2009 to 2025
$20.5M
The Role of Transforming Growth Factor Beta (TGFbeta) in Promoting Allergic InflammationZIAAI001203 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI FRISCHMEYER-GUERRERIO, PAMELA · 2015 to 2025
$10.6M
Clinical, Immunological and Genetic Analyses of ALPS and Related Immunedysregulatory DisordersZIAAI000732 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI RAO, V KONETI · 2009 to 2025
$10.5M
Understanding DOCK8 Function in Health and Human DiseaseZIAAI001193 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI SU, HELEN CHUN-HUI · 2014 to 2025
$4.5M
NIAID NIH HHS SI2 AI138586
6 · The paper itself

Abstract

Purpose: Though copy number variants (CNVs) have been suggested to play a significant role in inborn errors of immunity (IEI), the precise nature of this role remains largely unexplored. We sought to determine the diagnostic contribution of CNVs using genome-wide chromosomal microarray analysis (CMA) in children with IEI. Methods: We performed exome sequencing (ES) and CMA for 332 unrelated pediatric probands referred for evaluation of IEI. The analysis included primary, secondary, and incidental findings. Results: Of the 332 probands, 134 (40.4%) received molecular diagnoses. Of these, 116/134 (86.6%) were diagnosed by ES alone. An additional 15/134 (11.2%) were diagnosed by CMA alone, including two likely Conclusion: Pairing ES and CMA can provide a comprehensive evaluation to clarify the complex factors that contribute to both immune and non-immune phenotypes. Such a combined approach to genetic testing helps untangle complex phenotypes, not only by clarifying the differential diagnosis, but in some cases by identifying multiple diagnoses contributing to the overall clinical presentation.

Indexed as

ChromosomesGenetic TestingChildExome SequencingHumansMicroarray AnalysisPhenotypecopy numberdiagnosisgeneticimmunitymicroarraypediatricprimary immunodeficiencysequencing

Identifiers

PMID37215141
PMCPMC10196392
OpenAlexW4377564301

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.