Evidence map›Paper›PMID 37214944›Full record

ArticlebioRxiv : the preprint server for biology2023

Fulgor: A fast and compact

Jason Fan, Noor Pratap Singh, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Jason FanDepartment of Computer Science, University of Maryland, College Park, MD 20440, USA.ORCID 0000-0001-7617-4814
Noor Pratap SinghDepartment of Computer Science, University of Maryland, College Park, MD 20440, USA.ORCID 0000-0003-3721-2157
Jamshed KhanDepartment of Computer Science, University of Maryland, College Park, MD 20440, USA.ORCID 0000-0002-5129-9749
Giulio Ermanno PibiriDAIS, Ca' Foscari University of Venice, Venice, Italy.ORCID 0000-0003-0724-7092
Rob PatroDepartment of Computer Science, University of Maryland, College Park, MD 20440, USA.ORCID 0000-0001-8463-1675

Funding

A Modular Framework for Accurate, Interpretable, and Reproducible Analysis of Long Read RNA-Seq DataR01HG009937 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Michael Isaiah Love, Robert Patro · 2018 to 2026
$2.8M
NHGRI NIH HHS R01 HG009937
6 · The paper itself

Abstract

The problem of sequence identification or matching - determining the subset of references from a given collection that are likely to contain a query nucleotide sequence - is relevant for many important tasks in Computational Biology, such as metagenomics and pan-genome analysis. Due to the complex nature of such analyses and the large scale of the reference collections a resourceefficient solution to this problem is of utmost importance. The reference collection should therefore be pre-processed into an

Indexed as

Applied computingBioinformaticsColored de Bruijn GraphCompressionHashingk-mersPseudoalignmentRead-mapping

Identifiers

PMID37214944
PMCPMC10197524

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.