Evidence map›Paper›PMID 37212656›Full record

ArticleMicrobiology spectrum2023

The pGinger Family of Expression Plasmids.

Allison N Pearson, Mitchell G Thompson, Liam D Kirkpatrick, Cindy Ho, Khanh M Vuu, Lucas M Waldburger, Jay D Keasling, Patrick M Shih

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Identification of novel broad host-range promoter sequences functional in diverse Pseudomonadota by a promoter-trap approach.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  9. Assessing horizontal gene transfer in the rhizosphere ofApplied and environmental microbiology · 2024
    Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 3 countries.

Allison N Pearson *Joint BioEnergy Institute, Emeryville, California, USA.
Mitchell G Thompson *Joint BioEnergy Institute, Emeryville, California, USA.
Liam D KirkpatrickJoint BioEnergy Institute, Emeryville, California, USA.
Cindy HoJoint BioEnergy Institute, Emeryville, California, USA.
Khanh M VuuJoint BioEnergy Institute, Emeryville, California, USA.
Lucas M WaldburgerJoint BioEnergy Institute, Emeryville, California, USA.
Jay D KeaslingJoint BioEnergy Institute, Emeryville, California, USA.
Patrick M ShihJoint BioEnergy Institute, Emeryville, California, USA.ORCID 0000-0002-2119-3345
Lawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pGinger suite of expression plasmids comprises 43 plasmids that will enable precise constitutive and inducible gene expression in a wide range of Gram-negative bacterial species. Constitutive vectors are composed of 16 synthetic constitutive promoters upstream of red fluorescent protein (RFP), with a broad-host-range BBR1 origin and a kanamycin resistance marker. The family also has seven inducible systems (Jungle Express, Psal/NahR, Pm/XylS, Prha/RhaS, LacO1/LacI, LacUV5/LacI, and Ptet/TetR) controlling RFP expression on BBR1/kanamycin plasmid backbones. For four of these inducible systems (Jungle Express, Psal/NahR, LacO1/LacI, and Ptet/TetR), we created variants that utilize the RK2 origin and spectinomycin or gentamicin selection. Relevant RFP expression and growth data have been collected in the model bacterium Escherichia coli as well as Pseudomonas putida. All pGinger vectors are available via the Joint BioEnergy Institute (JBEI) Public Registry.

Indexed as

Escherichia coliMetabolic EngineeringPlasmidsPromoter Regions, Geneticmolecular geneticsplasmidsynthetic biology

Identifiers

PMID37212656
PMCPMC10269703
OpenAlexW4377220843

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.