Evidence map›Paper›PMID 37208392›Full record

ArticleScientific reports2023

Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source.

Mehmet Gul, Esra Ayan, Ebru Destan, J Austin Johnson, Alaleh Shafiei, Abdullah Kepceoğlu, Merve Yilmaz, Fatma Betül Ertem, İlkin Yapici, Bilge Tosun and 27 more

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Mehmet GulDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Esra AyanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Ebru DestanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
J Austin JohnsonDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Alaleh ShafieiDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Abdullah KepceoğluDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Merve YilmazDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Fatma Betül ErtemDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
İlkin YapiciDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Bilge TosunDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Nilüfer BaldirDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Nurettin TokayDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Zeliş NergizDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Gözde KarakadioğluDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Seyide Seda PaydosDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Cahine KulakmanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Cengiz Kaan FerahDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Ömür GüvenDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Necati AtalayDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Enver Kamil AkcanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Haluk CetinokDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Nazlı Eylül ArslanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Kardelen ŞabanoğluDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Bengisu AşciDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Serra TavliDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Helin GümüsboğaDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Sevde AltuntaşExperimental Medicine Application & Research Center, University of Health Sciences Türkiye, Istanbul, Türkiye.
Masami OtsukaMedicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.
Mikako FujitaMedicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.
Şaban Teki NExperimental Medicine Application & Research Center, University of Health Sciences Türkiye, Istanbul, Türkiye.
Halilibrahim Çi FtçiDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye.
Serdar DurdağiDepartment of Biophysics, School of Medicine, Bahcesehir University, Istanbul, Türkiye.
Ezgi KaracaIzmir Biomedicine and Genome Center, Izmir, Türkiye.
Burcu Kaplan TürközDepartment of Food Engineering, Faculty of Engineering, Ege University, Izmir, Türkiye.
Burak Veli KabasakalTurkish Accelerator and Radiation Laboratory (TARLA), Ankara University, Ankara, Türkiye.
Ahmet KatiExperimental Medicine Application & Research Center, University of Health Sciences Türkiye, Istanbul, Türkiye.
Hasan DeMi RciDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye. hdemirci@ku.edu.tr.

Funding

National Science Foundation NSF-1231306
6 · The paper itself

Abstract

High-resolution biomacromolecular structure determination is essential to better understand protein function and dynamics. Serial crystallography is an emerging structural biology technique which has fundamental limitations due to either sample volume requirements or immediate access to the competitive X-ray beamtime. Obtaining a high volume of well-diffracting, sufficient-size crystals while mitigating radiation damage remains a critical bottleneck of serial crystallography. As an alternative, we introduce the plate-reader module adapted for using a 72-well Terasaki plate for biomacromolecule structure determination at a convenience of a home X-ray source. We also present the first ambient temperature lysozyme structure determined at the Turkish light source (Turkish DeLight). The complete dataset was collected in 18.5 min with resolution extending to 2.39 Å and 100% completeness. Combined with our previous cryogenic structure (PDB ID: 7Y6A), the ambient temperature structure provides invaluable information about the structural dynamics of the lysozyme. Turkish DeLight provides robust and rapid ambient temperature biomacromolecular structure determination with limited radiation damage.

Indexed as

MuramidaseSynchrotronsCrystallography, X-RayTemperatureX-RaysMuramidase

Identifiers

PMID37208392
PMCPMC10198979

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.