Evidence map›Paper›PMID 37207342›Full record

ArticleNucleic acids research2023

Structural analysis of the Candida albicans mitochondrial DNA maintenance factor Gcf1p reveals a dynamic DNA-bridging mechanism.

Aleix Tarrés-Solé, Federica Battistini, Joachim M Gerhold, Olivier Piétrement, Belén Martínez-García, Elena Ruiz-López, Sébastien Lyonnais, Pau Bernadó, Joaquim Roca, Modesto Orozco and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Aleix Tarrés-SoléStructural MitoLab, Molecular Biology Institute Barcelona (IBMB-CSIC), Barcelona Science Park, Barcelona 08028, Spain.
Federica BattistiniInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona 08028, Spain.ORCID 0000-0002-7544-0938
Joachim M GerholdInstitute of Molecular and Cell Biology, University of Tartu, Tartu 51010, Estonia.
Olivier PiétrementGenome Integrity and Cancer UMR 9019 CNRS, Université Paris Saclay, Gustave Roussy Campus, 114 rue Edouard Vaillant 94805VillejuifCedex, France.ORCID 0000-0002-0018-7202
Belén Martínez-GarcíaMolecular Biology Institute Barcelona (IBMB-CSIC), Barcelona 08028, Spain.ORCID 0000-0001-9530-3271
Elena Ruiz-LópezStructural MitoLab, Molecular Biology Institute Barcelona (IBMB-CSIC), Barcelona Science Park, Barcelona 08028, Spain.
Sébastien LyonnaisStructural MitoLab, Molecular Biology Institute Barcelona (IBMB-CSIC), Barcelona Science Park, Barcelona 08028, Spain.
Pau BernadóCentre de Biologie Structurale (CBS), Inserm, CNRS and Université de Montpellier, France, Sébastien Lyonnais, UAR 3725 CNRS, Université de Montpellier, 34000 Montpellier, France.ORCID 0000-0001-7395-5922
Joaquim RocaMolecular Biology Institute Barcelona (IBMB-CSIC), Barcelona 08028, Spain.ORCID 0000-0003-1462-954X
Modesto OrozcoInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona 08028, Spain.
Eric Le CamGenome Integrity and Cancer UMR 9019 CNRS, Université Paris Saclay, Gustave Roussy Campus, 114 rue Edouard Vaillant 94805VillejuifCedex, France.
Juhan SedmanInstitute of Molecular and Cell Biology, University of Tartu, Tartu 51010, Estonia.
Maria SolàStructural MitoLab, Molecular Biology Institute Barcelona (IBMB-CSIC), Barcelona Science Park, Barcelona 08028, Spain.ORCID 0000-0002-0838-9706
Institut de Biologia Molecular de Barcelona · ESCentre National de la Recherche Scientifique · FRInstitute for Research in Biomedicine · ESUniversity of Tartu · EE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The compaction of mitochondrial DNA (mtDNA) is regulated by architectural HMG-box proteins whose limited cross-species similarity suggests diverse underlying mechanisms. Viability of Candida albicans, a human antibiotic-resistant mucosal pathogen, is compromised by altering mtDNA regulators. Among them, there is the mtDNA maintenance factor Gcf1p, which differs in sequence and structure from its human and Saccharomyces cerevisiae counterparts, TFAM and Abf2p. Our crystallographic, biophysical, biochemical and computational analysis showed that Gcf1p forms dynamic protein/DNA multimers by a combined action of an N-terminal unstructured tail and a long helix. Furthermore, an HMG-box domain canonically binds the minor groove and dramatically bends the DNA while, unprecedentedly, a second HMG-box binds the major groove without imposing distortions. This architectural protein thus uses its multiple domains to bridge co-aligned DNA segments without altering the DNA topology, revealing a new mechanism of mtDNA condensation.

Indexed as

Candida albicansDNA-Binding ProteinsDNA, MitochondrialFungal ProteinsHumansMitochondriaMitochondrial ProteinsSaccharomyces cerevisiaeTranscription FactorsDNA-Binding ProteinsDNA, MitochondrialFungal ProteinsMitochondrial ProteinsTranscription Factors

Identifiers

PMID37207342
PMCPMC10287934
OpenAlexW4377087480

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.