Evidence map›Paper›PMID 37205357›Full record

ArticlemedRxiv : the preprint server for health sciences2023

A phenome-wide association study of methylated GC-rich repeats identifies a GCC repeat expansion in

Bharati Jadhav, Paras Garg, Joke J F A van Vugt, Kristina Ibanez, Delia Gagliardi, William Lee, Mariya Shadrina, Tom Mokveld, Egor Dolzhenko, Alejandro Martin-Trujillo and 13 more

Open access · greenAbstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 7 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 3 countries.

Bharati Jadhav
Paras Garg
Joke J F A van Vugt
Kristina Ibanez
Delia Gagliardi
William Lee
Mariya Shadrina
Tom Mokveld
Egor Dolzhenko
Alejandro Martin-Trujillo
Scott L Gies
Clarissa Rocca
Mafalda Barbosa
Miten Jain
Nayana Lahiri
Katherine Lachlan
Benedict Paten
Genomics England Research Consortium
Project MinE ALS Sequencing Consortium
Arianna Tucci
Andrew J Sharp
Child Health and Development Institute · USQueen Mary University of London · GBUniversity of California, Santa Cruz · USUtrecht University · NLUniversity College London · GB

Funding

Dockstore: The Community Platform for Reproducible Biomedical Workflows and ApplicationsU24HG011853 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Jonathan Lawson, Benedict Paten · 2021 to 2026
$5.7M
Pilot investigation of tandem repeat variation as a cause of Alzheimer's disease using whole genome sequencing dataR01NS105781 · NINDS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SHARP, ANDREW JAMES · 2018 to 2022
$3.6M
A comprehensive study of tandem repeat variation as a cause of Alzheimer's diseaseRF1AG075051 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SHARP, ANDREW JAMES · 2023 to 2023
$2.2M
Big Omics Data Engine 2 SupercomputerS10OD026880 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2019 to 2019
$2.0M
NHGRI NIH HHS U24 HG011853NIH HHS S10 OD026880NINDS NIH HHS R01 NS105781
6 · The paper itself

Abstract

GC-rich tandem repeat expansions (TREs) are often associated with DNA methylation, gene silencing and folate-sensitive fragile sites and underlie several congenital and late-onset disorders. Through a combination of DNA methylation profiling and tandem repeat genotyping, we identified 24 methylated TREs and investigated their effects on human traits using PheWAS in 168,641 individuals from the UK Biobank, identifying 156 significant TRE:trait associations involving 17 different TREs. Of these, a GCC expansion in the promoter of

Identifiers

PMID37205357
PMCPMC10187445
OpenAlexW4372341359

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.