Evidence map›Paper›PMID 37205196›Full record

ArticleFrontiers in oncology2023

A multiplexed assay for quantifying immunomodulatory proteins supports correlative studies in immunotherapy clinical trials.

Jeffrey R Whiteaker, Lei Zhao, Regine M Schoenherr, Dongqing Huang, Rachel A Lundeen, Ulianna Voytovich, Jacob J Kennedy, Richard G Ivey, Chenwei Lin, Oscar D Murillo and 19 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 5 institutions in 1 country.

Jeffrey R WhiteakerClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Lei ZhaoClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Regine M SchoenherrClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Dongqing HuangClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Rachel A LundeenClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Ulianna VoytovichClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Jacob J KennedyClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Richard G IveyClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Chenwei LinClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Oscar D MurilloClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Travis D LorentzenClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Simona ColantonioCancer Research Technology Program, Antibody Characterization Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, United States.
Tessa W CaceresCancer Research Technology Program, Antibody Characterization Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, United States.
Rhonda R RobertsCancer Research Technology Program, Antibody Characterization Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, United States.
Joseph G KnottsCancer Research Technology Program, Antibody Characterization Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, United States.
Joshua J ReadingCancer Research Technology Program, Antibody Characterization Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, United States.
Candice D PerryCancer Research Technology Program, Antibody Characterization Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, United States.
Christopher W RichardsonCancer Research Technology Program, Antibody Characterization Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, United States.
Sandra S Garcia-BuntleyCancer Research Technology Program, Antibody Characterization Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, United States.
William BocikCancer Research Technology Program, Antibody Characterization Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, United States.
Stephen M HewittExperimental Pathology Laboratory, Laboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institute of Health, Bethesda, MD, United States.
Shrabanti ChowdhuryDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Jackie VandermeerClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Stephen D SmithClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Ajay K GopalClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Nirasha RamchurrenVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Steven P FlingVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Pei WangDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Amanda G PaulovichClinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA, United States.
Fred Hutch Cancer Center · USFrederick National Laboratory for Cancer Research · USUniversity of Washington Medical Center · USIcahn School of Medicine at Mount Sinai · USCenter for Cancer Research · US

Funding

Cancer Immunotherapy Trials Network Central Operations and Statistical CenterUM1CA154967 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DAVIDSON, NANCY ELLEN · 2017 to 2022
$20.7M
Experimental Pathology Laboratory (EPL)ZICBC011638 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HEWITT, STEPHEN · 2015 to 2025
$16.6M
Proteogenomic Studies aimed at understanding ovarian tumor responses to agents targeting the DNA damage response and translating this knowledge into clinical benefitU01CA214114 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BIRRER, MICHAEL, PAULOVICH, AMANDA G · 2017 to 2021
$8.4M
Clinical translation of a NexGen platform for quantifying protein networks in human biospecimensR01CA235575 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI AMANDA G PAULOVICH · 2019 to 2026
$6.0M
Proteogenomic studies to understand mechanisms and drivers of resistance to immunotherapiesU01CA271407 · NCI · FRED HUTCHINSON CANCER CENTER · PI Diwakar Davar, AMANDA G PAULOVICH · 2022 to 2026
$5.6M
Proteogenomic translator for cancer biomarker discovery towards precision medicineU24CA271114 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Avi Ma'ayan, Pei Wang · 2022 to 2026
$5.0M
Systems Biology based Proteogenomic Translator for Cancer Marker Discovery towards Precision MedicineU24CA210993 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SCHADT, ERIC E, WANG, PEI · 2016 to 2020
$4.6M
A proteomics research specialist in developing targeted mass spectrometry methods for quantifying proteins important in cancerR50CA211499 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Jeff Whiteaker · 2016 to 2026
$2.8M
Definition of Immune Infiltrate Phenotype and DNA Damage Response Deficits Across Diverse Murine Mammary CarcinomasR01CA239235 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BARCELLOS-HOFF, MARY HELEN · 2019 to 2023
$2.5M
NCI NIH HHS R01 CA235575NCI NIH HHS R50 CA211499NCI NIH HHS U01 CA214114NCI NIH HHS U01 CA271407NCI NIH HHS U24 CA210993NCI NIH HHS U24 CA271114NCI NIH HHS UM1 CA154967
6 · The paper itself

Abstract

Introduction: Immunotherapy is an effective treatment for a subset of cancer patients, and expanding the benefits of immunotherapy to all cancer patients will require predictive biomarkers of response and immune-related adverse events (irAEs). To support correlative studies in immunotherapy clinical trials, we are developing highly validated assays for quantifying immunomodulatory proteins in human biospecimens. Methods: Here, we developed a panel of novel monoclonal antibodies and incorporated them into a novel, multiplexed, immuno-multiple reaction monitoring mass spectrometry (MRM-MS)-based proteomic assay targeting 49 proteotypic peptides representing 43 immunomodulatory proteins. Results and discussion: The multiplex assay was validated in human tissue and plasma matrices, where the linearity of quantification was >3 orders of magnitude with median interday CVs of 8.7% (tissue) and 10.1% (plasma). Proof-of-principle demonstration of the assay was conducted in plasma samples collected in clinical trials from lymphoma patients receiving an immune checkpoint inhibitor. We provide the assays and novel monoclonal antibodies as a publicly available resource for the biomedical community.

Indexed as

correlative biomarkersimmuno-MRMimmuno-oncologyimmunotherapyproteomicstargeted proteomics

Identifiers

PMID37205196
PMCPMC10185886
OpenAlexW4367853637

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.