Evidence map›Paper›PMID 37204207›Full record

ArticleJournal of medicinal chemistry2023

Structure-Based Development of Isoform-Selective Inhibitors of Casein Kinase 1ε vs Casein Kinase 1δ.

Jun Yong Choi, Yoshihiko Noguchi, James M Alburger, Simon Bayle, Eugene Chung, Wayne Grant, Apirat Chaikuad, Stefan Knapp, Derek R Duckett, William R Roush

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. The circadian clock controls hepatic stellate cell activation via a BMAL1/CK1ε/REV-ERBα/transgelin signaling pathway.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Review
  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Jun Yong ChoiDepartment of Chemistry, The Scripps Research Institute, Scripps Florida, Jupiter, Florida 33458, United States.ORCID 0000-0001-8218-6440
Yoshihiko NoguchiDepartment of Chemistry, The Scripps Research Institute, Scripps Florida, Jupiter, Florida 33458, United States.
James M AlburgerDepartment of Chemistry, The Scripps Research Institute, Scripps Florida, Jupiter, Florida 33458, United States.
Simon BayleDepartment of Drug Discovery, Moffitt Cancer Center, Tampa, Florida 33612, United States.
Eugene ChungDepartment of Chemistry and Biochemistry, Queens College, Queens, New York 11367, United States.
Wayne GrantDepartment of Molecular Therapeutics, The Scripps Research Institute, Scripps Florida, Jupiter, Florida 33458, United States.
Apirat ChaikuadInstitute of Pharmaceutical Chemistry, Goethe University, Frankfurt am Main 60438, Germany.ORCID 0000-0003-1120-2209
Stefan KnappInstitute of Pharmaceutical Chemistry, Goethe University, Frankfurt am Main 60438, Germany.ORCID 0000-0001-5995-6494
Derek R DuckettDepartment of Drug Discovery, Moffitt Cancer Center, Tampa, Florida 33612, United States.
William R RoushDepartment of Chemistry, The Scripps Research Institute, Scripps Florida, Jupiter, Florida 33458, United States.ORCID 0000-0001-9785-5897
Scripps Research Institute · USGoethe University Frankfurt · DEMoffitt Cancer Center · USQueens College, CUNY · US

Funding

Therapeutic Targeting of Casein Kinase-1-delta in Primary and Metastatic Breast CancerR01CA223823 · NCI · SCRIPPS FLORIDA · PI CLEVELAND, JOHN L., DUCKETT, DEREK RONALD · 2018 to 2023
$3.7M
Targeting Casein Kinase 1d/e (CK1d/1e) in Cancer TherapeuticsR01CA175094 · NCI · SCRIPPS FLORIDA · PI ROUSH, WILLIAM R · 2014 to 2016
$1.5M
Development of Allosteric Modulators of Phosphatidylinositol 3-KinaseSC2GM130470 · NIGMS · QUEENS COLLEGE · PI CHOI, JUN-YONG · 2019 to 2021
$462k
NCI NIH HHS R01 CA175094NCI NIH HHS R01 CA223823NIGMS NIH HHS SC2 GM130470
6 · The paper itself

Abstract

Specific inhibition of a single kinase isoform is a challenging task due to the highly conserved nature of ATP-binding sites. Casein kinase 1 (CK1) δ and ε share 97% sequence identity in their catalytic domains. From a comparison of the X-ray crystal structures of CK1δ and CK1ε, we developed a potent and highly CK1ε-isoform-selective inhibitor (SR-4133). The X-ray co-crystal structure of the CK1δ-SR-4133 complex reveals that the electrostatic surface between the naphthyl unit of SR-4133 and CK1δ is mismatched, destabilizing the interaction of SR-4133 with CK1δ. Conversely, the hydrophobic surface area resulting from the Asp-Phe-Gly motif (DFG)-out conformation of CK1ε stabilizes the binding of SR-4133 in the ATP-binding pocket of CK1ε, leading to the selective inhibition of CK1ε. The potent CK1ε-selective agents display nanomolar growth inhibition of bladder cancer cells and inhibit the phosphorylation of 4E-BP1 in T24 cells, which is a direct downstream effector of CK1ε.

Indexed as

Casein Kinase IdeltaAdenosine TriphosphateBinding SitesCasein KinasesProtein IsoformsAdenosine TriphosphateCasein Kinase IdeltaCasein KinasesProtein Isoforms

Identifiers

PMID37204207
PMCPMC10304650
OpenAlexW4377094579

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.