Evidence map›Paper›PMID 37204130›Full record

ArticleMicrobiology (Reading, England)2023

An unexpected abundance of bidirectional promoters within

Alistair D Middlemiss, Emily A Warman, David Forrest, James R J Haycocks, David C Grainger

Open access · diamondAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Mapping direct and indirect MarA/SoxS/Rob/RamA regulons inMicrobiology (Reading, England) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Alistair D MiddlemissSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Emily A WarmanSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
David ForrestSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
James R J HaycocksSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
David C GraingerSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
University of Birmingham · GB

Funding

Wellcome Trust 212193/Z/18/Z
6 · The paper itself

Abstract

Transcription of the DNA template, to generate an RNA message, is the first step in gene expression. The process initiates at DNA sequences called promoters. Conventionally, promoters have been considered to drive transcription in a specific direction. However, in recent work, we showed that many prokaryotic promoters can drive divergent transcription. This is a consequence of key DNA sequences for transcription initiation being inherently symmetrical. Here, we used global transcription start site mapping to determine the prevalence of such bidirectional promoters in

Indexed as

PlasmidsPromoter Regions, GeneticSalmonella typhimuriumChromosomes, BacterialGenome, BacterialTranscription, GeneticTranscription Initiation Sitecappable-seqpervassiveRNA polymeraseRNA-seqtranscription

Identifiers

PMID37204130
PMCPMC10268837
OpenAlexW4377093464

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.