Evidence map›Paper›PMID 37202601›Full record

ArticleBiochemical genetics2023

CXCL8 as a Potential Biomarker for Crohn's Disease is Associated with Immune Infiltration and RNA Methylation.

Wei Chen, Zeyan Xu, Jingjing Jiang, Lu Chen, Yanfang Chen, Ting Yu, Hong Chen, Ruihua Shi

Abstract read
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In one paragraph

Article in Biochemical genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Wei ChenDepartment of Gastroenterology, Zhongda Hospital, Southeast University, Nanjing, 210009, China.
Zeyan XuDepartment of Gastroenterology, Zhongda Hospital, Southeast University, Nanjing, 210009, China.
Jingjing JiangDepartment of Gastroenterology, Zhongda Hospital, Southeast University, Nanjing, 210009, China.
Lu ChenDepartment of Gastroenterology, Zhongda Hospital, Southeast University, Nanjing, 210009, China.
Yanfang ChenDepartment of Gastroenterology, Zhongda Hospital, Southeast University, Nanjing, 210009, China.
Ting YuDepartment of Gastroenterology, Zhongda Hospital, Southeast University, Nanjing, 210009, China.
Hong ChenDepartment of Gastroenterology, Zhongda Hospital, Southeast University, Nanjing, 210009, China. njchenhong66@163.com.
Ruihua ShiDepartment of Gastroenterology, Zhongda Hospital, Southeast University, Nanjing, 210009, China. ruihuashi2023@163.com.
Zhongda Hospital Southeast University · CN

Funding

Jiangsu Provincial Chinese Hospital Administration ZT202120Jiangsu Provincial Health and Wellness Commission Scientific Research Project M2021032
6 · The paper itself

Abstract

TRP channels have an important role in regulating the function of gastrointestinal epithelial cells. The aim of this study was to investigate the molecular mechanisms of genes associated with TRP channels in Crohn's disease (CD) by bioinformatics approach and to identify potential key biomarkers. In our study, we identified TRP channel-related differentially expressed genes (DEGs) based on the GSE95095 dataset and the TRP channel-related gene set from the GeneCards database. Hub genes (CXCL8, HIF1A, NGF, JUN, IL1A) were identified by the PPI network and validated by the external GSE52746 dataset. Immune infiltration analysis revealed that CXCL8 was significantly correlated with B cells memory, NK cells activated, Mast cells resting, Mast cells activated, and Neutrophils. GSEA of CXCL8 results showed inositol phosphate metabolism, RNA polymerase, propanoate metabolism, MAPK signaling pathway, base excision repair, and Calcium signaling pathway. In addition, we constructed a lncRNA-miRNA-mRNA ceRNA network and a drug-gene interaction network. Finally, we performed in vitro experiments to verify that LPS induced CXCL8 expression in HT-29 cells and that knockdown of CXCL8 inhibited the inflammatory stimulatory effects of LPS. This study reveals that CXCL8 plays an important role in the pathogenesis of Crohn's disease and is expected to be a novel biomarker.

Indexed as

Crohn DiseaseBiomarkersHumansLipopolysaccharidesMethylationRNABiomarkersLipopolysaccharidesRNABioinformaticsBiomarkersCrohn's diseaseCXCL8TRP channels

Identifiers

PMID37202601
OpenAlexW4377012940

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.