Evidence map›Paper›PMID 37202422›Full record

ArticleNature communications2023

Mechanism of glycoform specificity and in vivo protection by an anti-afucosylated IgG nanobody.

Aaron Gupta, Kevin S Kao, Rachel Yamin, Deena A Oren, Yehuda Goldgur, Jonathan Du, Pete Lollar, Eric J Sundberg, Jeffrey V Ravetch

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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  5. Review
  6. Article
  7. Review
  8. Linking Effector Function to Antitumor Monoclonal Antibody Efficacy.Journal of immunology (Baltimore, Md. : 1950) · 2024
    Article
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  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Aaron Gupta *Laboratory of Molecular Genetics & Immunology, The Rockefeller University, New York, NY, USA.
Kevin S Kao *Laboratory of Molecular Genetics & Immunology, The Rockefeller University, New York, NY, USA.
Rachel YaminLaboratory of Molecular Genetics & Immunology, The Rockefeller University, New York, NY, USA.
Deena A OrenStructural Biology Resource Center, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-0074-2242
Yehuda GoldgurStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Jonathan DuDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.
Pete LollarDepartment of Pediatrics, Emory University School of Medicine, Atlanta, GA, USA.
Eric J SundbergDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0003-0478-3033
Jeffrey V RavetchLaboratory of Molecular Genetics & Immunology, The Rockefeller University, New York, NY, USA. ravetch@rockefeller.edu.ORCID 0000-0003-2024-9041

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
Understanding B cell memory in response to diverse virus infectionsU19AI111825 · NIAID · ROCKEFELLER UNIVERSITY · PI BOURNAZOS, STYLIANOS · 2014 to 2023
$26.0M
Rationalizing glycoengineering strategies for immunotherapeutic antibodiesR01AI149297 · NIAID · EMORY UNIVERSITY · PI JEFFREY Victor RAVETCH, ERIC JOHN SUNDBERG · 2020 to 2026
$3.7M
Targeting EndoS to auto-antibodiesR21AI159765 · NIAID · EMORY UNIVERSITY · PI SUNDBERG, ERIC JOHN · 2021 to 2022
$430k
Crystallization Robot for the Structural Biology Resource Center at RockefellerS10RR027037 · NCRR · ROCKEFELLER UNIVERSITY · PI OREN, DEENA ABELLS · 2010 to 2010
$147k
Bill & Melinda Gates Foundation INV-034057NCI NIH HHS P30 CA008748NCRR NIH HHS S10 RR027037NIAID NIH HHS R01 AI149297NIAID NIH HHS R21 AI159765NIAID NIH HHS U19 AI111825NIGMS NIH HHS P30 GM133893NIGMS NIH HHS T32 GM007739
6 · The paper itself

Abstract

Immunoglobulin G (IgG) antibodies contain a complex N-glycan embedded in the hydrophobic pocket between its heavy chain protomers. This glycan contributes to the structural organization of the Fc domain and determines its specificity for Fcγ receptors, thereby dictating distinct cellular responses. The variable construction of this glycan structure leads to highly-related, but non-equivalent glycoproteins known as glycoforms. We previously reported synthetic nanobodies that distinguish IgG glycoforms. Here, we present the structure of one such nanobody, X0, in complex with the Fc fragment of afucosylated IgG1. Upon binding, the elongated CDR3 loop of X0 undergoes a conformational shift to access the buried N-glycan and acts as a 'glycan sensor', forming hydrogen bonds with the afucosylated IgG N-glycan that would otherwise be sterically hindered by the presence of a core fucose residue. Based on this structure, we designed X0 fusion constructs that disrupt pathogenic afucosylated IgG1-FcγRIIIa interactions and rescue mice in a model of dengue virus infection.

Indexed as

Immunoglobulin GReceptors, IgGAnimalsGlycosylationImmunoglobulin Fc FragmentsMicePolysaccharidesImmunoglobulin Fc FragmentsImmunoglobulin GPolysaccharidesReceptors, IgG

Identifiers

PMID37202422
PMCPMC10195009

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.