Evidence map›Paper›PMID 37202420›Full record

ArticleCommunications biology2023

Asymmetric conformations of cleaved HIV-1 envelope glycoprotein trimers in styrene-maleic acid lipid nanoparticles.

Kunyu Wang, Shijian Zhang, Eden P Go, Haitao Ding, Wei Li Wang, Hanh T Nguyen, John C Kappes, Heather Desaire, Joseph Sodroski, Youdong Mao

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
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  8. Article
  9. Article
  10. Alternative substitutions of N332 in HIV-1bioRxiv : the preprint server for biology · 2023
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Kunyu Wang *State Key Laboratory for Mesoscopic Physics, School of Physics, Peking University, Beijing, China.
Shijian Zhang *Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA.
Eden P GoDepartment of Chemistry, University of Kansas, Lawrence, KS, USA.
Haitao DingDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Wei Li WangState Key Laboratory for Mesoscopic Physics, School of Physics, Peking University, Beijing, China.
Hanh T NguyenDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA.
John C KappesDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Heather DesaireDepartment of Chemistry, University of Kansas, Lawrence, KS, USA.
Joseph SodroskiDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA. joseph_sodroski@dfci.harvard.edu.ORCID 0000-0002-9750-1615
Youdong MaoState Key Laboratory for Mesoscopic Physics, School of Physics, Peking University, Beijing, China. ymao@pku.edu.cn.ORCID 0000-0001-9302-2257
Harvard University · USPeking University · CNUniversity of Alabama at Birmingham · USUniversity of Kansas · US

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01AI150471 · NIAID · DREXEL UNIVERSITY · PI CHAIKEN, IRWIN M · 2019 to 2022
$7.8M
Conformational Landscape of the HIV-1 Envelope GlycoproteinsR01AI124982 · NIAID · DANA-FARBER CANCER INST · PI SODROSKI, JOSEPH G · 2016 to 2025
$6.7M
Generating Native Env Glycosylation in HIV Vaccine CandidatesR01AI125093 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DESAIRE, HEATHER R · 2016 to 2019
$2.7M
Enrichment of the State-1 Conformation of the HIV-1 Envelope GlycoproteinR01AI145547 · NIAID · DANA-FARBER CANCER INST · PI SODROSKI, JOSEPH G · 2019 to 2021
$2.2M
NIAID NIH HHS P01 AI150471NIAID NIH HHS P30 AI027767NIAID NIH HHS R01 AI124982NIAID NIH HHS R01 AI125093NIAID NIH HHS R01 AI145547
6 · The paper itself

Abstract

During virus entry, the pretriggered human immunodeficiency virus (HIV-1) envelope glycoprotein (Env) trimer initially transits into a default intermediate state (DIS) that remains structurally uncharacterized. Here, we present cryo-EM structures at near-atomic resolution of two cleaved full-length HIV-1 Env trimers purified from cell membranes in styrene-maleic acid lipid nanoparticles without antibodies or receptors. The cleaved Env trimers exhibited tighter subunit packing than uncleaved trimers. Cleaved and uncleaved Env trimers assumed remarkably consistent yet distinct asymmetric conformations, with one smaller and two larger opening angles. Breaking conformational symmetry is allosterically coupled with dynamic helical transformations of the gp41 N-terminal heptad repeat (HR1

Indexed as

HIV-1HIV Envelope Protein gp41GlycoproteinsHumansLiposomesMaleatesNanoparticlesProtein ConformationStyrenesGlycoproteinsHIV Envelope Protein gp41Lipid NanoparticlesLiposomesMaleatesmaleic acidStyrenes

Identifiers

PMID37202420
PMCPMC10195785
OpenAlexW4377092870

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.