Evidence map›Paper›PMID 37200359›Full record

ArticlePloS one2023

Identification of some bioactive compounds from Trignonella foenumgraecum as possible inhibitors of PPARϒ for diabetes treatment through molecular docking studies, pharmacophore modelling and ADMET profiling: An in-silico study.

Olayinka Sunday Okoh, AbdulbasitHaliru Yakubu, Abayomi Emmanuel Adegboyega, Daniel Ejim Uti, Uket Nta Obeten, Samuel Ali Agada, Folusho Oluwaloni, Grace Inioluwa Johnson, Leonard Paul Mela, Rita Onyekachukwu Asomadu and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 1 country.

Olayinka Sunday OkohDepartment of Chemical Sciences, Anchor University, Lagos, Nigeria.ORCID 0000-0001-6438-3379
AbdulbasitHaliru YakubuDepartment of Pharmaceutical Chemistry, University of Maiduguri, Maiduguri, Nigeria.ORCID 0000-0001-6018-9931
Abayomi Emmanuel AdegboyegaDepartment of Biochemistry, Faculty of Basic Medical Science, University of Jos, Jos, Nigeria.
Daniel Ejim UtiDepartment of Biochemistry, Faculty of Basic Medical Sciences, College of Medicine, Federal University of Health Sciences, Otukpo, Benue State, Nigeria.ORCID 0000-0002-1129-1785
Uket Nta ObetenDepartment of Chemistry/Biochemistry and Molecular Biology, Alex Ekwueme Federal University, Ndufu-Alike Ikwo, Abakaliki, Ebonyi State, Nigeria.
Samuel Ali AgadaDepartment of Biochemistry, Faculty of Basic Medical Sciences, College of Medicine, Federal University of Health Sciences, Otukpo, Benue State, Nigeria.
Folusho OluwaloniDepartment of Biotechnology, Federal Institute of Industrial Research, Oshodi, Lagos, Nigeria.
Grace Inioluwa JohnsonJaris Computational Biology Centre, Jos, Nigeria.
Leonard Paul MelaDepartment of Clinical Pharmacology and Therapeutics, College of Medical Sciences, University of Maiduguri, Maiduguri, Nigeria.
Rita Onyekachukwu AsomaduUniversity of Nigeria, Nnsuka, Nigeria.
Opeyemi IwaloyeJaris Computational Biology Centre, Jos, Nigeria.
Titilayo Omolara JohnsonDepartment of Biochemistry, Faculty of Basic Medical Science, University of Jos, Jos, Nigeria.ORCID 0000-0002-4230-8025
Obasi Uche OrjiDepartment of Biochemistry, Faculty of Science, Ebonyi State University, Abakaliki, Ebonyi State, Nigeria.
University of Jos · NGUniversity of Maiduguri · NGAlex Ekwueme Federal University, Ndufu-AlikeAnchor University LagosEbonyi State University · NGFederal Institute of Industrial Research Oshodi · NGFederal University of Technology · NGUniversity of Nigeria · NG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oral antidiabetic agents including the peroxisome proliferator-activated receptor gamma (PPARγ) agonists are available for the clinical management of diabetes mellitus (DM) but most are characterized by many adverse effects. In this study, we explore the antidiabetic properties of phytoconstituents from Trigonellafeonumgraecum (Fabaceae) as potential agonist of PPARγ; using in silico molecular docking, molecular mechanics generalized surface area (MM/GBSA)free binding energy prediction, Pharmacophore modeling experiment, and Pharmacokinetic/ toxicity analysis. One hundred and forty (140) compounds derived from Trigonellafeonumgraecum were screened by molecular docking against protein target PDB 3VI8. Results obtained from binding affinity (BA) and that of binding free energy (BFE) revealed five 5 compounds; arachidonic acid (CID_10467, BA -10.029, BFE -58.9), isoquercetin (CID_5280804, BA -9.507kcal/mol, BFE -56.33), rutin (CID_5280805, BA -9.463kcal/mol, BFE -56.33), quercetin (CID_10121947, BA -11.945kcal/mol, BFE -45.89) and (2S)-2-[[4-methoxy-3-[(pyrene-1-carbonylamino)methyl]phenyl]methyl]butanoic acid (CID_25112371, BA -10.679kcal/mol, BFE -45.73); and were superior to the standard; Rosiglitazone with a docking score of -7.672. Hydrogen bonding was notable in the protein-ligand complex interaction, with hydrophobic bond, polar bond and pipi stacking also observed. Their Pharmacokinetic/ toxicity profile showed varying druggable characteristics, but; arachidonic acid had the most favorable characteristics. These compounds are potential agonists of PPARγ and are considered as antidiabetic agents after successful experimental validation.

Indexed as

Diabetes MellitusTrigonellaArachidonic AcidHumansHypoglycemic AgentsLigandsMolecular Docking SimulationMolecular Dynamics SimulationPharmacophorePPAR gammaArachidonic AcidHypoglycemic AgentsLigandsPPAR gamma

Identifiers

PMID37200359
PMCPMC10194899
OpenAlexW4377047064

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.