Evidence map›Paper›PMID 37199624›Full record

ArticleJournal of virology2023

Conserved Characteristics of NMPylation Activities of Alpha- and Betacoronavirus NiRAN Domains.

Heiko Slanina, Ramakanth Madhugiri, Kai Wenk, Tess Reinke, Karin Schultheiß, Julia Schultheis, Nadja Karl, Uwe Linne, John Ziebuhr

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Heiko Slanina *Institute of Medical Virology, Justus Liebig University, Giessen, Germany.
Ramakanth Madhugiri *Institute of Medical Virology, Justus Liebig University, Giessen, Germany.
Kai WenkInstitute of Medical Virology, Justus Liebig University, Giessen, Germany.
Tess ReinkeInstitute of Medical Virology, Justus Liebig University, Giessen, Germany.
Karin SchultheißInstitute of Medical Virology, Justus Liebig University, Giessen, Germany.
Julia SchultheisInstitute of Medical Virology, Justus Liebig University, Giessen, Germany.
Nadja KarlInstitute of Medical Virology, Justus Liebig University, Giessen, Germany.
Uwe LinneMass Spectrometry Facility, Department of Chemistry, Philipps University, Marburg, Germany.
John ZiebuhrInstitute of Medical Virology, Justus Liebig University, Giessen, Germany.ORCID 0000-0002-5741-8825
Justus-Liebig-Universität Gießen · DEPhilipps University of Marburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coronavirus genome replication and expression are mediated by the viral replication-transcription complex (RTC) which is assembled from multiple nonstructural proteins (nsp). Among these, nsp12 represents the central functional subunit. It harbors the RNA-directed RNA polymerase (RdRp) domain and contains, at its N terminus, an additional domain called NiRAN which is widely conserved in coronaviruses and other nidoviruses. In this study, we produced bacterially expressed coronavirus nsp12s to investigate and compare NiRAN-mediated NMPylation activities from representative alpha- and betacoronaviruses. We found that the four coronavirus NiRAN domains characterized to date have a number of conserved properties, including (i) robust nsp9-specific NMPylation activities that appear to operate largely independently of the C-terminal RdRp domain, (ii) nucleotide substrate preference for UTP followed by ATP and other nucleotides, (iii) dependence on divalent metal ions, with Mn

Indexed as

CoronaviridaeProtein DomainsRNA-Dependent RNA PolymeraseConserved SequenceHumansNucleotidesProtein Structure, SecondaryRNA, ViralSARS-CoV-2Vero CellsViral Nonstructural ProteinsViral ProteinsNucleotidesRNA-Dependent RNA PolymeraseRNA, ViralViral Nonstructural ProteinsViral ProteinscoronavirusNMPylationreplication

Identifiers

PMID37199624
PMCPMC10308930
OpenAlexW4377010806

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.