ArticleNature2023
RNA conformational propensities determine cellular activity.
Erratum issuedAbstract read
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Article in Nature, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.
0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
32 citing papers in PubMed.
- Key Points to Consider When Studying RNA Remodeling by Proteins.Methods in molecular biology (Clifton, N.J.) · 2027Review
- MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing.Nucleic acids research · 2026Article
- Contrasting effects of different molecular crowding environments on base-pair opening/closing dynamics of DNA triplex structures.The FEBS journal · 2026Article
- Protein crowders remodel RNA electrostatics, hydration, and dynamics: a challenge to steric crowding models.Nucleic acids research · 2026Article
- Thermodynamic prediction of RNA cellular activity from sequence via conformational ensembles.Cell · 2026Article
- Assessing the contribution of rare DNA states to cancer mutational signatures using sequence-specific conformational fingerprinting.Nature communications · 2026Article
- Integrated experimental and AI innovations for RNA structure determination.Nature biotechnology · 2026Review
- Decoding RNA Structural Ensembles: Energy Landscape Exploration of the TAR Stemloop.Journal of chemical theory and computation · 2026Article
- Structural probing of RNA hairpins quantifies protein occupancy on RNA and links it to function in human cells.bioRxiv : the preprint server for biology · 2026Article
- Revealing hidden protonated conformational states in RNA dynamic ensembles.Nucleic acids research · 2025Article
- Assessing the contribution of rare DNA states to cancer mutational signatures using sequence-specific conformational fingerprinting.Research square · 2025Article
- Generative AI for computational chemistry: A roadmap to predicting emergent phenomena.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Structural basis and affinity improvement for an ATP-binding DNA aptamer.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Kinetic Dissection of Proton-Coupled Conformational Transitions in Nucleic Acids by Integrating pH-Dependent NMR and Chemical Modifications.Journal of the American Chemical Society · 2025Article
- Exploring RNA destabilization mechanisms in biomolecular condensates through atomistic simulations.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Structures of complete HIV-1 TAR RNA portray a dynamic platform poised for protein binding and structural remodeling.Nature communications · 2025Article
- gRNAde: Geometric Deep Learning for 3D RNA inverse design.bioRxiv : the preprint server for biology · 2025Article
- Exchange-selective excitation pulses for dynamic magnetic resonance.Science advances · 2025Article
- The conformational space of RNase P RNA in solution.Nature · 2025Article
- Article
Corrections and comments
- Erratum issued
Authors and funding
9 authors.
Megan L KenDepartment of Biochemistry, Duke University School of Medicine, Durham, NC, USA.ORCID http://orcid.org/0000-0001-8336-9935
Rohit RoyCenter for Genomic and Computational Biology, Duke University School of Medicine, Durham, NC, USA.
Ainan GengDepartment of Biochemistry, Duke University School of Medicine, Durham, NC, USA.
Laura R GanserDepartment of Biophysics, Johns Hopkins University, Baltimore, MD, USA.
Akanksha ManghraniDepartment of Biochemistry, Duke University School of Medicine, Durham, NC, USA.
Bryan R CullenDepartment of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC, USA.ORCID http://orcid.org/0000-0002-8638-6850
Ursula Schulze-GahmenGladstone Institute of Virology, San Francisco, CA, USA. ursula.schulzegahmen@gladstone.ucsf.edu.ORCID http://orcid.org/0000-0003-3919-4474
Daniel HerschlagDepartment of Biochemistry, Stanford University, Stanford, CA, USA. herschla@stanford.edu.ORCID http://orcid.org/0000-0002-4685-1973
Hashim M Al-HashimiDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA. ha2639@cumc.columbia.edu.ORCID http://orcid.org/0000-0003-0681-1747
Funding
HOPE - HIV Obstruction by Programmed EpigeneticsUM1AI164559 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI Lishomwa C Ndhlovu, Melanie Maria Ott · 2021 to 2026
$32.2MCenter for Structural Biology of HIV RNAU54AI170660 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ALICE TELESNITSKY · 2022 to 2026
$32.1MMEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2MThe Center for HIV RNA Studies (CRNA)U54AI150470 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TOLBERT, BLANTON SMITH · 2019 to 2021
$15.1MMedical Scientist Training Program Training GrantT32GM145449 · NIGMS · DUKE UNIVERSITY · PI Christopher D Kontos · 2022 to 2026
$6.6MFundamental Studies of RNA Conformational ThermodynamicsR01GM132899 · NIGMS · STANFORD UNIVERSITY · PI AL-HASHIMI, HASHIM M, HERSCHLAG, DANIEL · 2019 to 2022
$2.7MTargeting Tat/TAR interactions with the superelongation complex to develop novel treatments for HIV/AIDSR21AI156915 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI SCHULZE-GAHMEN, URSULA · 2021 to 2022
$520kDeciphering the principles of selective recognition of complex RNAs by small moleculesF30AI143282 · NIAID · DUKE UNIVERSITY · PI KEN, MEGAN L · 2019 to 2021
$126kNIAID NIH HHS F30 AI143282NIAID NIH HHS R21 AI156915NIAID NIH HHS U54 AI150470NIAID NIH HHS U54 AI170660NIAID NIH HHS UM1 AI164559NIGMS NIH HHS R01 GM132899NIGMS NIH HHS T32 GM007171NIGMS NIH HHS T32 GM145449
Abstract
Cellular processes are the product of interactions between biomolecules, which associate to form biologically active complexes
Indexed as
HIV-1HIV Long Terminal RepeatNucleic Acid ConformationRNA, Viraltat Gene Products, Human Immunodeficiency VirusTranscriptional ActivationRNA, Viraltat Gene Products, Human Immunodeficiency Virus
Identifiers
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Read underepoch 390
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.