Evidence map›Paper›PMID 37198258›Full record

ArticleScientific reports2023

Cell activation-based screening of natively paired human T cell receptor repertoires.

Ahmed S Fahad, Cheng Yu Chung, Sheila N López Acevedo, Nicoleen Boyle, Bharat Madan, Matías F Gutiérrez-González, Rodrigo Matus-Nicodemos, Amy D Laflin, Rukmini R Ladi, John Zhou and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 8 citations in OpenAlex.

  1. T Cell Thoughts.Immunological reviews · 2026
    Review
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  10. Focusing on CD8Journal of experimental & clinical cancer research : CR · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Ahmed S Fahad *Department of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
Cheng Yu Chung *Department of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
Sheila N López AcevedoDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
Nicoleen BoyleDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
Bharat MadanDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
Matías F Gutiérrez-GonzálezDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
Rodrigo Matus-NicodemosVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Amy D LaflinDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
Rukmini R LadiDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
John ZhouDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
Jacy WolfeDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA.
Sian Llewellyn-LaceyDivision of Infection and Immunity, Cardiff University School of Medicine, University Hospital of Wales, Cardiff, CF14 4XN, UK.
Richard A KoupVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Daniel C DouekVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Henry H BalfourDepartment of Laboratory Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN, 55455, USA.
David A PriceDivision of Infection and Immunity, Cardiff University School of Medicine, University Hospital of Wales, Cardiff, CF14 4XN, UK.
Brandon J DeKoskyDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, 66044, USA. dekosky@mit.edu.
University of Kansas · USNational Institutes of Health · USCardiff University · GBNational Institute of Allergy and Infectious Diseases · USUniversity Hospital of Wales · GBUniversity of Minnesota Medical Center · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
Understanding the mechanobiology of stem cells in a microengineered 3D cardiac tissue environment with cardiomyopathyP20GM103638 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI LUNTE, SUSAN M · 2012 to 2021
$22.1M
The Genome Analysis CoreZICAI005133 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI DOUEK, DANIEL CESAR · 2019 to 2025
$16.9M
Comprehensive analysis of human adaptive immune receptors to elucidate correlates of Epstein-Barr virus disease suppressionDP5OD023118 · OD · UNIVERSITY OF KANSAS LAWRENCE · PI DEKOSKY, BRANDON JAMES · 2016 to 2022
$2.2M
T cell responses shared among triple negative breast cancer patientsR21CA230487 · NCI · UNIVERSITY OF COLORADO DENVER · PI SLANSKY, JILL E · 2018 to 2019
$377k
NCI NIH HHS R21 CA230487NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P20 GM103638NIH HHS DP5 OD023118Wellcome TrustWellcome Trust 100326/Z/12/Z
6 · The paper itself

Abstract

Adoptive immune therapies based on the transfer of antigen-specific T cells have been used successfully to treat various cancers and viral infections, but improved techniques are needed to identify optimally protective human T cell receptors (TCRs). Here we present a high-throughput approach to the identification of natively paired human TCRα and TCRβ (TCRα:β) genes encoding heterodimeric TCRs that recognize specific peptide antigens bound to major histocompatibility complex molecules (pMHCs). We first captured and cloned TCRα:β genes from individual cells, ensuring fidelity using a suppression PCR. We then screened TCRα:β libraries expressed in an immortalized cell line using peptide-pulsed antigen-presenting cells and sequenced activated clones to identify the cognate TCRs. Our results validated an experimental pipeline that allows large-scale repertoire datasets to be annotated with functional specificity information, facilitating the discovery of therapeutically relevant TCRs.

Indexed as

Receptors, Antigen, T-CellT-LymphocytesAntigensCloning, MolecularHumansPeptidesReceptors, Antigen, T-Cell, alpha-betaAntigensPeptidesReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID37198258
PMCPMC10192375
OpenAlexW4377011409

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.