Evidence map›Paper›PMID 37198172›Full record

ArticleNature communications2023

Higher-order epistasis shapes natural variation in germ stem cell niche activity.

Sarah R Fausett, Asma Sandjak, Bénédicte Billard, Christian Braendle

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sarah R FausettUniversité Côte d'Azur, CNRS, Inserm, IBV, Nice, France. fausetts@uncw.edu.ORCID 0000-0003-2046-0226
Asma Sandjak *Université Côte d'Azur, CNRS, Inserm, IBV, Nice, France.
Bénédicte Billard *Université Côte d'Azur, CNRS, Inserm, IBV, Nice, France.
Christian BraendleUniversité Côte d'Azur, CNRS, Inserm, IBV, Nice, France. braendle@unice.fr.ORCID 0000-0003-0203-4581

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To study how natural allelic variation explains quantitative developmental system variation, we characterized natural differences in germ stem cell niche activity, measured as progenitor zone (PZ) size, between two Caenorhabditis elegans isolates. Linkage mapping yielded candidate loci on chromosomes II and V, and we found that the isolate with a smaller PZ size harbours a 148 bp promoter deletion in the Notch ligand, lag-2/Delta, a central signal promoting germ stem cell fate. As predicted, introducing this deletion into the isolate with a large PZ resulted in a smaller PZ size. Unexpectedly, restoring the deleted ancestral sequence in the isolate with a smaller PZ did not increase-but instead further reduced-PZ size. These seemingly contradictory phenotypic effects are explained by epistatic interactions between the lag-2/Delta promoter, the chromosome II locus, and additional background loci. These results provide first insights into the quantitative genetic architecture regulating an animal stem cell system.

Indexed as

Caenorhabditis elegans ProteinsEpistasis, GeneticAnimalsCaenorhabditis elegansChromosome MappingGerm CellsStem Cell NicheCaenorhabditis elegans Proteins

Identifiers

PMID37198172
PMCPMC10192456

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.