ArticleAoB PLANTS2023
A large-scale assessment of the quality of plant genome assemblies using the LTR assembly index.
Article in AoB PLANTS, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Contrasting regulation of protein-coding genes and lncRNA homeologs in allotetraploid Coffea arabica.Planta · 2026Article
- Systematic prioritization of candidate genes in camptothecin biosynthesis using multi-omics and deep learning.The plant genome · 2026Article
- LTR retrotransposons shape genome architecture, function, and evolution in diverse plant species.Frontiers in plant science · 2026Article
- First draft genome of the decaploid species,GigaByte (Hong Kong, China) · 2026Article
- A high-quality chromosome-level reference genome of Pulsatilla chinensis.Scientific data · 2025Article
- The complete telomere-to-telomere genome assembly of Lablab purpureus (L.) Sweet.Scientific data · 2025Article
- Chromosome-level genome assembly of Hippophae neurocarpa.Scientific data · 2025Article
- Assembling genomes of non-model plants: A case study with evolutionary insights from Ranunculus (Ranunculaceae).The Plant journal : for cell and molecular biology · 2025Article
- Special Issue: "Molecular Genetics and Plant Breeding, 5th Edition".International journal of molecular sciences · 2025Article
- Unlocking the African bioeconomy and strengthening biodiversity conservation through genomics and bioinformatics.npj biodiversity · 2025Review
- Chromosome scale assembly unveils genomic structure and gene families of Calotropis procera.Molecular genetics and genomics : MGG · 2025Article
- Chromosome-level genome assembly of the crofton weed (Ageratina adenophora).Scientific data · 2025Article
- Chromosome-scale genome assembly of Trigonella corniculata (L.)L. (Nagauri pan /Kasuri methi), an important spice.Scientific data · 2025Article
- First draft reference genome and annotation of the alternative oil species Physaria fendleri.G3 (Bethesda, Md.) · 2024Article
- Genome-wide identification, and gene expression analysis of NBS-LRR domain containing R genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Wolfberry genome database: integrated genomic datasets for studying molecular biology.Frontiers in plant science · 2024Article
- Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning.Frontiers in plant science · 2023Article
- MegaLTR: a web server and standalone pipeline for detecting and annotating LTR-retrotransposons in plant genomes.Frontiers in plant science · 2023Article
- Amaranth Genomic Resource Database: an integrated database resource of Amaranth genes and genomics.Frontiers in plant science · 2023Article
- Identification, characterization, and validation of NBS-encoding genes in grass pea.Frontiers in genetics · 2023Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recent advances in genome sequencing have led to an increase in the number of sequenced genomes. However, the presence of repetitive sequences complicates the assembly of plant genomes. The LTR assembly index (LAI) has recently been widely used to assess the quality of genome assembly, as a higher LAI is associated with a higher quality of assembly. Here, we assessed the quality of assembled genomes of 1664 plant and algal genomes using LAI and reported the results as data repository called PlantLAI (https://bioinformatics.um6p.ma/PlantLAI). A number of 55 117 586 pseudomolecules/scaffolds with a total length of 988.11 gigabase-pairs were examined using the LAI workflow. A total of 46 583 551 accurate LTR-RTs were discovered, including 2 263 188
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