Evidence map›Paper›PMID 37195876›Full record

ArticleThe Plant cell2023

The HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE15-HISTONE DEACETYLASE9 complex associates with HYPONASTIC LEAVES 1 to modulate microRNA expression in response to abscisic acid signaling.

Junghoon Park, Axel J Giudicatti, Zein Eddin Bader, Min Kyun Han, Christian Møller, Agustin L Arce, Zheng-Yi Xu, Seong Wook Yang, Pablo A Manavella, Dae-Jin Yun

Abstract read
In one paragraph

Article in The Plant cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Plant microRNA maturation and function.Nature reviews. Molecular cell biology · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Artificial miRNAs and target-mimics as potential tools for crop improvement.Physiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Review
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Junghoon ParkDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, South Korea.ORCID 0000-0002-7209-2990
Axel J GiudicattiInstituto de Agrobiotecnología del Litoral (CONICET-UNL), Cátedra de Biología Celular y Molecular, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe 3000, Argentina.ORCID 0000-0002-4496-7091
Zein Eddin BaderDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, South Korea.ORCID 0000-0002-8160-8135
Min Kyun HanDepartment of Systems Biology, Institute of Life Science and Biotechnology, Yonsei University, Seoul 03722, Korea.ORCID 0000-0002-1497-9657
Christian MøllerDepartment of Systems Biology, Institute of Life Science and Biotechnology, Yonsei University, Seoul 03722, Korea.ORCID 0000-0002-2919-6380
Agustin L ArceInstituto de Agrobiotecnología del Litoral (CONICET-UNL), Cátedra de Biología Celular y Molecular, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe 3000, Argentina.ORCID 0000-0003-3619-3898
Zheng-Yi XuKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun 130024, China.ORCID 0000-0001-9820-2329
Seong Wook YangDepartment of Systems Biology, Institute of Life Science and Biotechnology, Yonsei University, Seoul 03722, Korea.ORCID 0000-0002-0100-4594
Pablo A ManavellaInstituto de Agrobiotecnología del Litoral (CONICET-UNL), Cátedra de Biología Celular y Molecular, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe 3000, Argentina.ORCID 0000-0003-3589-4414
Dae-Jin YunDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, South Korea.ORCID 0000-0002-3638-6043

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The regulation of microRNA (miRNA) biogenesis is crucial for maintaining plant homeostasis under biotic and abiotic stress. The crosstalk between the RNA polymerase II (Pol-II) complex and the miRNA processing machinery has emerged as a central hub modulating transcription and cotranscriptional processing of primary miRNA transcripts (pri-miRNAs). However, it remains unclear how miRNA-specific transcriptional regulators recognize MIRNA loci. Here, we show that the Arabidopsis (Arabidopsis thaliana) HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE15 (HOS15)-HISTONE DEACETYLASE9 (HDA9) complex is a conditional suppressor of miRNA biogenesis, particularly in response to abscisic acid (ABA). When treated with ABA, hos15/hda9 mutants show enhanced transcription of pri-miRNAs that is accompanied by increased processing, leading to overaccumulation of a set of mature miRNAs. Moreover, upon recognition of the nascent pri-miRNAs, the ABA-induced recruitment of the HOS15-HDA9 complex to MIRNA loci is guided by HYPONASTIC LEAVES 1 (HYL1). The HYL1-dependent recruitment of the HOS15-HDA9 complex to MIRNA loci suppresses expression of MIRNAs and processing of pri-miRNA. Most importantly, our findings indicate that nascent pri-miRNAs serve as scaffolds for recruiting transcriptional regulators, specifically to MIRNA loci. This indicates that RNA molecules can act as regulators of their own expression by causing a negative feedback loop that turns off their transcription, providing a self-buffering system.

Indexed as

ArabidopsisArabidopsis ProteinsMicroRNAsAbscisic AcidGene Expression Regulation, PlantHistone DeacetylasesHistonesRNA-Binding ProteinsRNA Processing, Post-TranscriptionalAbscisic AcidArabidopsis ProteinsHDA9 protein, ArabidopsisHistone DeacetylasesHistonesHYL1 protein, ArabidopsisMicroRNAsRNA-Binding Proteins

Identifiers

PMID37195876
PMCPMC10396366

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.